Analysis of interatomic Contacts of Structural Units in PDB entry:
7R9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7R9J entry

There is 1 chain in PDB entry 7R9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
J
 ARG 18ARG 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7R9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
J
21 26Right-handed alpha
Helix 2
AA2
J
26 34Right-handed alpha
Helix 3
AA3
J
60 67Right-handed alpha
Helix 4
AA4
J
72 76Right-handed 310
Helix 5
AA5
J
79 87Right-handed alpha
Helix 6
AA6
J
94 112Right-handed alpha
Helix 7
AA7
J
116 139Right-handed alpha
Helix 8
AA8
J
146 159Right-handed alpha
Helix 9
AA9
J
166 181Right-handed alpha
Helix 10
AB1
J
202 206Right-handed 310
Helix 11
AB2
J
260 280Right-handed alpha
Helix 12
AB3
J
291 302Right-handed alpha
Helix 13
AB4
J
310 314Right-handed 310
Helix 14
AB5
J
316 322Right-handed alpha
Helix 15
AB6
J
373 398Right-handed alpha
Helix 16
AB7
J
405 419Right-handed alpha
Helix 17
AB8
J
426 438Right-handed alpha
Helix 18
AB9
J
438 449Right-handed alpha
Helix 19
AC1
J
455 463Right-handed alpha
Helix 20
AC2
J
492 511Right-handed alpha
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There are 4 sheets in PDB entry 7R9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
140 141first strand
Strand 2
J
399 402anti-parallel
Strand 3
J
489 491anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
193 194first strand
Strand 2
J
365 366parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
232 233first strand
Strand 2
J
283 284parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
346 348first strand
Strand 2
J
351 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il