Analysis of interatomic Contacts of Structural Units in PDB entry:
7RAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RAD entry

There are 2 chains in PDB entry 7RAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8SER 500
B
 LEU 8SER 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7RAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 70Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
80 98Right-handed alpha
Helix 4
AA4
A
98 111Right-handed alpha
Helix 5
AA5
A
113 120Right-handed alpha
Helix 6
AA6
A
120 136Right-handed alpha
Helix 7
AA7
A
170 185Right-handed alpha
Helix 8
AA8
A
198 212Right-handed alpha
Helix 9
AA9
A
229 235Right-handed alpha
Helix 10
AB1
A
246 260Right-handed alpha
Helix 11
AB2
A
282 296Right-handed alpha
Helix 12
AB3
A
297 300Right-handed 310
Helix 13
AB4
A
314 329Right-handed alpha
Helix 14
AB5
A
346 363Right-handed alpha
Helix 15
AB6
A
393 398Right-handed alpha
Helix 16
AB7
A
412 422Right-handed alpha
Helix 17
AB8
A
435 446Right-handed alpha
Helix 18
AB9
A
468 470Right-handed 310
Helix 19
AC1
A
478 484Right-handed 310
Helix 20
AC2
B
55 70Right-handed alpha
Helix 21
AC3
B
74 79Right-handed alpha
Helix 22
AC4
B
80 98Right-handed alpha
Helix 23
AC5
B
98 111Right-handed alpha
Helix 24
AC6
B
113 120Right-handed alpha
Helix 25
AC7
B
120 136Right-handed alpha
Helix 26
AC8
B
170 185Right-handed alpha
Helix 27
AC9
B
198 212Right-handed alpha
Helix 28
AD1
B
227 234Right-handed alpha
Helix 29
AD2
B
246 260Right-handed alpha
Helix 30
AD3
B
282 296Right-handed alpha
Helix 31
AD4
B
297 300Right-handed 310
Helix 32
AD5
B
314 328Right-handed alpha
Helix 33
AD6
B
346 363Right-handed alpha
Helix 34
AD7
B
393 398Right-handed alpha
Helix 35
AD8
B
412 422Right-handed alpha
Helix 36
AD9
B
435 446Right-handed alpha
Helix 37
AE1
B
468 470Right-handed 310
Helix 38
AE2
B
478 484Right-handed 310
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There are 8 sheets in PDB entry 7RAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
27 29anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
47 52anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
150 158anti-parallel
Strand 3
A
486 494anti-parallel
Strand 4
B
450 453parallel
Strand 5
B
428 432parallel
Strand 6
B
273 277parallel
Strand 7
B
305 311parallel
Strand 8
B
404 410parallel
Strand 9
B
384 387parallel
Strand 10
B
366 369anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
188 193parallel
Strand 3
A
161 165parallel
Strand 4
A
240 244parallel
Strand 5
A
264 268parallel
Strand 6
A
472 473anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 369first strand
Strand 2
A
384 387anti-parallel
Strand 3
A
404 410parallel
Strand 4
A
305 311parallel
Strand 5
A
273 277parallel
Strand 6
A
428 432parallel
Strand 7
A
450 453parallel
Strand 8
B
486 494parallel
Strand 9
B
150 158anti-parallel
Strand 10
B
143 144anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
27 29anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
47 52anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
188 192parallel
Strand 3
B
161 165parallel
Strand 4
B
240 244parallel
Strand 5
B
264 268parallel
Strand 6
B
472 473anti-parallel
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