Analysis of interatomic Contacts of Structural Units in PDB entry:
7RAU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RAU entry

There are 4 chains in PDB entry 7RAU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 115ILE 756
B
 LYS 115ILE 756
C
 LYS 115ILE 756
D
 LYS 115ILE 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are116 helices in PDB entry 7RAU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 129Right-handed alpha
Helix 2
AA2
A
131 149Right-handed alpha
Helix 3
AA3
A
155 162Right-handed alpha
Helix 4
AA4
A
170 178Right-handed alpha
Helix 5
AA5
A
182 198Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
218 225Right-handed alpha
Helix 8
AA8
A
227 238Right-handed alpha
Helix 9
AA9
A
264 272Right-handed alpha
Helix 10
AB1
A
274 281Right-handed alpha
Helix 11
AB2
A
293 297Right-handed 310
Helix 12
AB3
A
298 306Right-handed alpha
Helix 13
AB4
A
315 329Right-handed alpha
Helix 14
AB5
A
343 352Right-handed alpha
Helix 15
AB6
A
353 362Right-handed alpha
Helix 16
AB7
A
367 371Right-handed 310
Helix 17
AB8
A
402 409Right-handed alpha
Helix 18
AB9
A
415 420Right-handed alpha
Helix 19
AC1
A
422 436Right-handed alpha
Helix 20
AC2
A
436 458Right-handed alpha
Helix 21
AC3
A
480 508Right-handed alpha
Helix 22
AC4
A
519 542Right-handed alpha
Helix 23
AC5
A
546 565Right-handed alpha
Helix 24
AC6
A
566 569Right-handed 310
Helix 25
AC7
A
573 607Right-handed alpha
Helix 26
AC8
A
624 638Right-handed alpha
Helix 27
AC9
A
650 681Right-handed alpha
Helix 28
AD1
A
683 705Right-handed alpha
Helix 29
AD2
A
708 715Right-handed alpha
Helix 30
AD3
B
116 129Right-handed alpha
Helix 31
AD4
B
131 149Right-handed alpha
Helix 32
AD5
B
155 162Right-handed alpha
Helix 33
AD6
B
170 178Right-handed alpha
Helix 34
AD7
B
182 198Right-handed alpha
Helix 35
AD8
B
199 205Right-handed alpha
Helix 36
AD9
B
218 225Right-handed alpha
Helix 37
AE1
B
227 238Right-handed alpha
Helix 38
AE2
B
264 272Right-handed alpha
Helix 39
AE3
B
274 281Right-handed alpha
Helix 40
AE4
B
293 297Right-handed 310
Helix 41
AE5
B
298 306Right-handed alpha
Helix 42
AE6
B
315 329Right-handed alpha
Helix 43
AE7
B
343 352Right-handed alpha
Helix 44
AE8
B
353 362Right-handed alpha
Helix 45
AE9
B
367 371Right-handed 310
Helix 46
AF1
B
402 409Right-handed alpha
Helix 47
AF2
B
415 420Right-handed alpha
Helix 48
AF3
B
422 436Right-handed alpha
Helix 49
AF4
B
436 458Right-handed alpha
Helix 50
AF5
B
480 508Right-handed alpha
Helix 51
AF6
B
519 542Right-handed alpha
Helix 52
AF7
B
546 565Right-handed alpha
Helix 53
AF8
B
566 569Right-handed 310
Helix 54
AF9
B
573 607Right-handed alpha
Helix 55
AG1
B
624 638Right-handed alpha
Helix 56
AG2
B
650 681Right-handed alpha
Helix 57
AG3
B
683 705Right-handed alpha
Helix 58
AG4
B
708 715Right-handed alpha
Helix 59
AG5
C
116 129Right-handed alpha
Helix 60
AG6
C
131 149Right-handed alpha
Helix 61
AG7
C
155 162Right-handed alpha
Helix 62
AG8
C
170 178Right-handed alpha
Helix 63
AG9
C
182 198Right-handed alpha
Helix 64
AH1
C
199 205Right-handed alpha
Helix 65
AH2
C
218 225Right-handed alpha
Helix 66
AH3
C
227 238Right-handed alpha
Helix 67
AH4
C
264 272Right-handed alpha
Helix 68
AH5
C
274 281Right-handed alpha
Helix 69
AH6
C
293 297Right-handed 310
Helix 70
AH7
C
298 306Right-handed alpha
Helix 71
AH8
C
315 329Right-handed alpha
Helix 72
AH9
C
343 352Right-handed alpha
Helix 73
AI1
C
353 362Right-handed alpha
Helix 74
AI2
C
367 371Right-handed 310
Helix 75
AI3
C
402 409Right-handed alpha
Helix 76
AI4
C
415 420Right-handed alpha
Helix 77
AI5
C
422 436Right-handed alpha
Helix 78
AI6
C
436 458Right-handed alpha
Helix 79
AI7
C
480 508Right-handed alpha
Helix 80
AI8
C
519 542Right-handed alpha
Helix 81
AI9
C
546 565Right-handed alpha
Helix 82
AJ1
C
566 569Right-handed 310
Helix 83
AJ2
C
573 607Right-handed alpha
Helix 84
AJ3
C
624 638Right-handed alpha
Helix 85
AJ4
C
650 681Right-handed alpha
Helix 86
AJ5
C
683 705Right-handed alpha
Helix 87
AJ6
C
708 715Right-handed alpha
Helix 88
AJ7
D
116 129Right-handed alpha
Helix 89
AJ8
D
131 149Right-handed alpha
Helix 90
AJ9
D
155 162Right-handed alpha
Helix 91
AK1
D
170 178Right-handed alpha
Helix 92
AK2
D
182 198Right-handed alpha
Helix 93
AK3
D
199 205Right-handed alpha
Helix 94
AK4
D
218 225Right-handed alpha
Helix 95
AK5
D
227 238Right-handed alpha
Helix 96
AK6
D
264 272Right-handed alpha
Helix 97
AK7
D
274 281Right-handed alpha
Helix 98
AK8
D
293 297Right-handed 310
Helix 99
AK9
D
298 306Right-handed alpha
Helix 100
AL1
D
315 329Right-handed alpha
Helix 101
AL2
D
343 352Right-handed alpha
Helix 102
AL3
D
353 362Right-handed alpha
Helix 103
AL4
D
367 371Right-handed 310
Helix 104
AL5
D
402 409Right-handed alpha
Helix 105
AL6
D
415 420Right-handed alpha
Helix 106
AL7
D
422 436Right-handed alpha
Helix 107
AL8
D
436 458Right-handed alpha
Helix 108
AL9
D
480 508Right-handed alpha
Helix 109
AM1
D
519 542Right-handed alpha
Helix 110
AM2
D
546 565Right-handed alpha
Helix 111
AM3
D
566 569Right-handed 310
Helix 112
AM4
D
573 607Right-handed alpha
Helix 113
AM5
D
624 638Right-handed alpha
Helix 114
AM6
D
650 681Right-handed alpha
Helix 115
AM7
D
683 705Right-handed alpha
Helix 116
AM8
D
708 715Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7RAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 382first strand
Strand 2
A
385 391anti-parallel
Strand 3
A
727 737anti-parallel
Strand 4
A
719 724anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 382first strand
Strand 2
B
385 391anti-parallel
Strand 3
B
727 737anti-parallel
Strand 4
B
719 724anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
377 382first strand
Strand 2
C
385 391anti-parallel
Strand 3
C
727 737anti-parallel
Strand 4
C
719 724anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
377 382first strand
Strand 2
D
385 391anti-parallel
Strand 3
D
727 737anti-parallel
Strand 4
D
719 724anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il