Analysis of interatomic Contacts of Structural Units in PDB entry:
7RAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RAV entry

There is 1 chain in PDB entry 7RAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 47ARG 915
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 7RAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 70Right-handed 310
Helix 2
AA2
A
77 84Right-handed alpha
Helix 3
AA3
A
112 121Right-handed alpha
Helix 4
AA4
A
159 165Right-handed alpha
Helix 5
AA5
A
177 183Right-handed alpha
Helix 6
AA6
A
214 221Right-handed alpha
Helix 7
AA7
A
224 231Right-handed alpha
Helix 8
AA8
A
234 240Right-handed alpha
Helix 9
AA9
A
274 280Right-handed alpha
Helix 10
AB1
A
296 301Right-handed alpha
Helix 11
AB2
A
332 339Right-handed alpha
Helix 12
AB3
A
343 350Right-handed alpha
Helix 13
AB4
A
401 418Right-handed alpha
Helix 14
AB5
A
454 459Right-handed alpha
Helix 15
AB6
A
460 462Right-handed 310
Helix 16
AB7
A
475 489Right-handed alpha
Helix 17
AB8
A
492 498Right-handed 310
Helix 18
AB9
A
514 521Right-handed alpha
Helix 19
AC1
A
531 542Right-handed alpha
Helix 20
AC2
A
555 559Right-handed 310
Helix 21
AC3
A
560 569Right-handed alpha
Helix 22
AC4
A
603 615Right-handed alpha
Helix 23
AC5
A
619 630Right-handed alpha
Helix 24
AC6
A
642 651Right-handed alpha
Helix 25
AC7
A
652 654Right-handed 310
Helix 26
AC8
A
662 679Right-handed alpha
Helix 27
AC9
A
682 704Right-handed alpha
Helix 28
AD1
A
709 717Right-handed alpha
Helix 29
AD2
A
723 728Right-handed 310
Helix 30
AD3
A
745 763Right-handed alpha
Helix 31
AD4
A
765 778Right-handed alpha
Helix 32
AD5
A
781 788Right-handed alpha
Helix 33
AD6
A
792 797Right-handed alpha
Helix 34
AD7
A
803 814Right-handed alpha
Helix 35
AD8
A
858 878Right-handed alpha
Helix 36
AD9
A
882 887Right-handed alpha
Helix 37
AE1
A
910 914Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 7RAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
95 97anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
195 197anti-parallel
Strand 3
A
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
313 314anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
598 599anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
576 580parallel
Strand 3
A
546 551parallel
Strand 4
A
500 505parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il