Analysis of interatomic Contacts of Structural Units in PDB entry:
7RB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RB9 entry

There are 7 chains in PDB entry 7RB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 3	GLU 72
B	GLY 74	PHE 375
D	GLU 1205	ALA 1889
A	ASP 3	GLU 72
A	GLY 74	PHE 375
C	ASP 3	GLU 72
C	GLY 74	PHE 375

There are 96 helices in PDB entry 7RB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	56	61	Right-handed alpha
Helix 2	AA2	B	79	95	Right-handed alpha
Helix 3	AA3	B	97	101	Right-handed 310
Helix 4	AA4	B	112	126	Right-handed alpha
Helix 5	AA5	B	137	145	Right-handed alpha
Helix 6	AA6	B	172	175	Right-handed 310
Helix 7	AA7	B	181	194	Right-handed alpha
Helix 8	AA8	B	202	217	Right-handed alpha
Helix 9	AA9	B	222	231	Right-handed alpha
Helix 10	AB1	B	252	257	Right-handed alpha
Helix 11	AB2	B	258	262	Right-handed 310
Helix 12	AB3	B	263	268	Right-handed 310
Helix 13	AB4	B	273	283	Right-handed alpha
Helix 14	AB5	B	289	294	Right-handed alpha
Helix 15	AB6	B	301	305	Right-handed 310
Helix 16	AB7	B	308	321	Right-handed alpha
Helix 17	AB8	B	334	336	Right-handed 310
Helix 18	AB9	B	337	348	Right-handed alpha
Helix 19	AC1	B	350	356	Right-handed 310
Helix 20	AC2	B	359	366	Right-handed alpha
Helix 21	AC3	B	369	374	Right-handed alpha
Helix 22	AC4	D	1218	1230	Right-handed alpha
Helix 23	AC5	D	1231	1233	Right-handed 310
Helix 24	AC6	D	1256	1262	Right-handed alpha
Helix 25	AC7	D	1266	1271	Right-handed alpha
Helix 26	AC8	D	1274	1290	Right-handed alpha
Helix 27	AC9	D	1304	1319	Right-handed alpha
Helix 28	AD1	D	1321	1325	Right-handed 310
Helix 29	AD2	D	1326	1334	Right-handed alpha
Helix 30	AD3	D	1335	1342	Right-handed alpha
Helix 31	AD4	D	1380	1384	Right-handed 310
Helix 32	AD5	D	1393	1403	Right-handed alpha
Helix 33	AD6	D	1404	1412	Right-handed alpha
Helix 34	AD7	D	1428	1433	Right-handed 310
Helix 35	AD8	D	1434	1449	Right-handed alpha
Helix 36	AD9	D	1452	1470	Right-handed alpha
Helix 37	AE1	D	1490	1501	Right-handed alpha
Helix 38	AE2	D	1503	1512	Right-handed alpha
Helix 39	AE3	D	1528	1559	Right-handed alpha
Helix 40	AE4	D	1583	1616	Right-handed alpha
Helix 41	AE5	D	1617	1620	Right-handed 310
Helix 42	AE6	D	1627	1636	Right-handed alpha
Helix 43	AE7	D	1640	1650	Right-handed alpha
Helix 44	AE8	D	1655	1668	Right-handed alpha
Helix 45	AE9	D	1698	1703	Right-handed alpha
Helix 46	AF1	D	1708	1716	Right-handed alpha
Helix 47	AF2	D	1720	1734	Right-handed alpha
Helix 48	AF3	D	1753	1770	Right-handed alpha
Helix 49	AF4	D	1792	1804	Right-handed alpha
Helix 50	AF5	D	1805	1813	Right-handed alpha
Helix 51	AF6	D	1821	1829	Right-handed alpha
Helix 52	AF7	D	1843	1855	Right-handed alpha
Helix 53	AF8	D	1857	1861	Right-handed 310
Helix 54	AF9	D	1873	1887	Right-handed alpha
Helix 55	AG1	A	56	61	Right-handed alpha
Helix 56	AG2	A	79	95	Right-handed alpha
Helix 57	AG3	A	97	101	Right-handed 310
Helix 58	AG4	A	112	126	Right-handed alpha
Helix 59	AG5	A	137	145	Right-handed alpha
Helix 60	AG6	A	172	175	Right-handed 310
Helix 61	AG7	A	181	194	Right-handed alpha
Helix 62	AG8	A	202	217	Right-handed alpha
Helix 63	AG9	A	222	231	Right-handed alpha
Helix 64	AH1	A	252	257	Right-handed alpha
Helix 65	AH2	A	258	262	Right-handed 310
Helix 66	AH3	A	263	268	Right-handed 310
Helix 67	AH4	A	273	283	Right-handed alpha
Helix 68	AH5	A	289	294	Right-handed alpha
Helix 69	AH6	A	301	305	Right-handed 310
Helix 70	AH7	A	308	321	Right-handed alpha
Helix 71	AH8	A	334	336	Right-handed 310
Helix 72	AH9	A	337	348	Right-handed alpha
Helix 73	AI1	A	350	356	Right-handed 310
Helix 74	AI2	A	359	366	Right-handed alpha
Helix 75	AI3	A	369	374	Right-handed alpha
Helix 76	AI4	C	56	61	Right-handed alpha
Helix 77	AI5	C	79	95	Right-handed alpha
Helix 78	AI6	C	97	101	Right-handed 310
Helix 79	AI7	C	112	126	Right-handed alpha
Helix 80	AI8	C	137	145	Right-handed alpha
Helix 81	AI9	C	172	175	Right-handed 310
Helix 82	AJ1	C	181	194	Right-handed alpha
Helix 83	AJ2	C	202	217	Right-handed alpha
Helix 84	AJ3	C	222	231	Right-handed alpha
Helix 85	AJ4	C	252	257	Right-handed alpha
Helix 86	AJ5	C	258	262	Right-handed 310
Helix 87	AJ6	C	263	268	Right-handed 310
Helix 88	AJ7	C	273	283	Right-handed alpha
Helix 89	AJ8	C	289	294	Right-handed alpha
Helix 90	AJ9	C	301	305	Right-handed 310
Helix 91	AK1	C	308	321	Right-handed alpha
Helix 92	AK2	C	334	336	Right-handed 310
Helix 93	AK3	C	337	348	Right-handed alpha
Helix 94	AK4	C	350	356	Right-handed 310
Helix 95	AK5	C	359	366	Right-handed alpha
Helix 96	AK6	C	369	374	Right-handed alpha

There are 22 sheets in PDB entry 7RB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	169	170	anti-parallel
Strand 4	A	41	42	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1237	1238	first strand
Strand 2	D	1243	1246	anti-parallel
Strand 3	D	1775	1780	parallel
Strand 4	D	1293	1297	parallel
Strand 5	D	1567	1572	parallel
Strand 6	D	1355	1364	anti-parallel
Strand 7	D	1367	1378	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1343	1344	first strand
Strand 2	D	1352	1353	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1513	1517	first strand
Strand 2	D	1522	1526	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1673	1674	first strand
Strand 2	D	1682	1687	anti-parallel
Strand 3	D	1690	1695	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RB9