Analysis of interatomic Contacts of Structural Units in PDB entry:
7RCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RCD entry

There are 3 chains in PDB entry 7RCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7LYS 299
B
 G -1 G 24
C
 C 1 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7RCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
53 65Right-handed alpha
Helix 3
AA3
A
86 97Right-handed alpha
Helix 4
AA4
A
102 119Right-handed alpha
Helix 5
AA5
A
124 136Right-handed alpha
Helix 6
AA6
A
144 150Right-handed alpha
Helix 7
AA7
A
167 178Right-handed alpha
Helix 8
AA8
A
208 220Right-handed alpha
Helix 9
AA9
A
241 248Right-handed alpha
Helix 10
AB1
A
248 256Right-handed alpha
Helix 11
AB2
A
260 278Right-handed alpha
Helix 12
AB3
A
279 282Right-handed 310
Helix 13
AB4
A
283 299Right-handed alpha
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There are 2 sheets in PDB entry 7RCD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
40 50anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
68 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 187first strand
Strand 2
A
194 205anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
223 225anti-parallel
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