Analysis of interatomic Contacts of Structural Units in PDB entry:
7RCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RCM entry

There are 2 chains in PDB entry 7RCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 392
B
 ALA 2LEU 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7RCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
104 106Right-handed 310
Helix 4
AA4
A
107 116Right-handed alpha
Helix 5
AA5
A
140 157Right-handed alpha
Helix 6
AA6
A
162 178Right-handed alpha
Helix 7
AA7
A
184 193Right-handed alpha
Helix 8
AA8
A
231 250Right-handed alpha
Helix 9
AA9
A
254 258Right-handed 310
Helix 10
AB1
A
259 265Right-handed alpha
Helix 11
AB2
A
266 270Right-handed 310
Helix 12
AB3
A
271 297Right-handed alpha
Helix 13
AB4
A
299 317Right-handed alpha
Helix 14
AB5
A
322 334Right-handed alpha
Helix 15
AB6
A
360 371Right-handed alpha
Helix 16
AB7
B
8 25Right-handed alpha
Helix 17
AB8
B
45 49Right-handed 310
Helix 18
AB9
B
104 106Right-handed 310
Helix 19
AC1
B
107 117Right-handed alpha
Helix 20
AC2
B
140 157Right-handed alpha
Helix 21
AC3
B
162 178Right-handed alpha
Helix 22
AC4
B
184 193Right-handed alpha
Helix 23
AC5
B
231 250Right-handed alpha
Helix 24
AC6
B
254 258Right-handed 310
Helix 25
AC7
B
259 266Right-handed alpha
Helix 26
AC8
B
267 270Right-handed 310
Helix 27
AC9
B
271 298Right-handed alpha
Helix 28
AD1
B
299 317Right-handed alpha
Helix 29
AD2
B
322 334Right-handed alpha
Helix 30
AD3
B
360 371Right-handed alpha
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There are 5 sheets in PDB entry 7RCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
125 131parallel
Strand 4
A
54 67anti-parallel
Strand 5
A
30 39anti-parallel
Strand 6
A
388 390anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
208 212anti-parallel
Strand 4
B
208 212anti-parallel
Strand 5
B
197 202anti-parallel
Strand 6
B
51 52anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 343first strand
Strand 2
A
349 357anti-parallel
Strand 3
A
218 228anti-parallel
Strand 4
A
377 381anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
125 131parallel
Strand 4
B
54 67anti-parallel
Strand 5
B
30 39anti-parallel
Strand 6
B
388 390anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 343first strand
Strand 2
B
349 357anti-parallel
Strand 3
B
218 228anti-parallel
Strand 4
B
377 381anti-parallel
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