Analysis of interatomic Contacts of Structural Units in PDB entry:
7RD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RD0 entry

There is 1 chain in PDB entry 7RD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 55LYS 554
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7RD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 92Right-handed alpha
Helix 2
AA2
A
93 105Right-handed alpha
Helix 3
AA3
A
107 118Right-handed alpha
Helix 4
AA4
A
132 142Right-handed alpha
Helix 5
AA5
A
159 164Right-handed alpha
Helix 6
AA6
A
175 181Right-handed alpha
Helix 7
AA7
A
181 186Right-handed alpha
Helix 8
AA8
A
231 244Right-handed alpha
Helix 9
AA9
A
274 281Right-handed alpha
Helix 10
AB1
A
297 300Right-handed 310
Helix 11
AB2
A
301 312Right-handed alpha
Helix 12
AB3
A
349 356Right-handed alpha
Helix 13
AB4
A
357 367Right-handed alpha
Helix 14
AB5
A
369 380Right-handed alpha
Helix 15
AB6
A
403 410Right-handed alpha
Helix 16
AB7
A
417 430Right-handed alpha
Helix 17
AB8
A
464 482Right-handed alpha
Helix 18
AB9
A
484 488Right-handed 310
Helix 19
AC1
A
542 553Right-handed alpha
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There are 7 sheets in PDB entry 7RD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
192 194anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
225 228parallel
Strand 3
A
440 444anti-parallel
Strand 4
A
450 453anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 128first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
145 150anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
249 255anti-parallel
Strand 3
A
526 532anti-parallel
Strand 4
A
508 519anti-parallel
Strand 5
A
495 505anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 323first strand
Strand 2
A
345 348anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
335 337anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
461 462anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il