Analysis of interatomic Contacts of Structural Units in PDB entry:
7RD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RD7 entry

There is 1 chain in PDB entry 7RD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 154SER 1141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7RD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 167Right-handed alpha
Helix 2
AA2
A
185 194Right-handed alpha
Helix 3
AA3
A
196 209Right-handed alpha
Helix 4
AA4
A
223 250Right-handed alpha
Helix 5
AA5
A
363 367Right-handed 310
Helix 6
AA6
A
391 396Right-handed alpha
Helix 7
AA7
A
405 434Right-handed alpha
Helix 8
AA8
A
439 452Right-handed alpha
Helix 9
AA9
A
454 475Right-handed alpha
Helix 10
AB1
A
492 496Right-handed 310
Helix 11
AB2
A
530 538Right-handed alpha
Helix 12
AB3
A
561 576Right-handed alpha
Helix 13
AB4
A
594 608Right-handed alpha
Helix 14
AB5
A
666 671Right-handed alpha
Helix 15
AB6
A
679 689Right-handed alpha
Helix 16
AB7
A
703 712Right-handed alpha
Helix 17
AB8
A
756 766Right-handed alpha
Helix 18
AB9
A
777 788Right-handed alpha
Helix 19
AC1
A
827 838Right-handed alpha
Helix 20
AC2
A
838 847Right-handed alpha
Helix 21
AC3
A
858 873Right-handed alpha
Helix 22
AC4
A
883 885Right-handed 310
Helix 23
AC5
A
886 892Right-handed alpha
Helix 24
AC6
A
905 911Right-handed alpha
Helix 25
AC7
A
919 927Right-handed alpha
Helix 26
AC8
A
927 961Right-handed alpha
Helix 27
AC9
A
971 979Right-handed alpha
Helix 28
AD1
A
982 990Right-handed alpha
Helix 29
AD2
A
996 1000Right-handed 310
Helix 30
AD3
A
1004 1011Right-handed 310
Helix 31
AD4
A
1017 1044Right-handed alpha
Helix 32
AD5
A
1049 1072Right-handed alpha
Helix 33
AD6
A
1080 1093Right-handed alpha
Helix 34
AD7
A
1109 1138Right-handed alpha
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There are 7 sheets in PDB entry 7RD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
335 338anti-parallel
Strand 3
A
350 354anti-parallel
Strand 4
A
358 362anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
264 266anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
379 386anti-parallel
Strand 3
A
287 293anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 303first strand
Strand 2
A
313 317anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 485first strand
Strand 2
A
913 915anti-parallel
Strand 3
A
895 899parallel
Strand 4
A
877 881parallel
Strand 5
A
499 502parallel
Strand 6
A
769 773parallel
Strand 7
A
852 854parallel
Strand 8
A
824 826parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 526first strand
Strand 2
A
509 520anti-parallel
Strand 3
A
741 752anti-parallel
Strand 4
A
693 702anti-parallel
Strand 5
A
659 665anti-parallel
Strand 6
A
646 653anti-parallel
Strand 7
A
630 638anti-parallel
Strand 8
A
621 624anti-parallel
Strand 9
A
610 614anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
589 591anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il