Analysis of interatomic Contacts of Structural Units in PDB entry:
7RD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RD8 entry

There is 1 chain in PDB entry 7RD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 154SER 1141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7RD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 167Right-handed alpha
Helix 2
AA2
A
181 196Right-handed alpha
Helix 3
AA3
A
196 209Right-handed alpha
Helix 4
AA4
A
218 221Right-handed 310
Helix 5
AA5
A
222 236Right-handed alpha
Helix 6
AA6
A
236 253Right-handed alpha
Helix 7
AA7
A
319 324Right-handed alpha
Helix 8
AA8
A
365 367Right-handed 310
Helix 9
AA9
A
387 391Right-handed 310
Helix 10
AB1
A
392 397Right-handed alpha
Helix 11
AB2
A
405 434Right-handed alpha
Helix 12
AB3
A
439 452Right-handed alpha
Helix 13
AB4
A
454 475Right-handed alpha
Helix 14
AB5
A
492 496Right-handed 310
Helix 15
AB6
A
530 541Right-handed alpha
Helix 16
AB7
A
561 577Right-handed alpha
Helix 17
AB8
A
595 608Right-handed alpha
Helix 18
AB9
A
666 675Right-handed alpha
Helix 19
AC1
A
680 690Right-handed alpha
Helix 20
AC2
A
703 712Right-handed alpha
Helix 21
AC3
A
755 765Right-handed alpha
Helix 22
AC4
A
777 788Right-handed alpha
Helix 23
AC5
A
828 835Right-handed alpha
Helix 24
AC6
A
838 849Right-handed alpha
Helix 25
AC7
A
858 874Right-handed alpha
Helix 26
AC8
A
883 886Right-handed 310
Helix 27
AC9
A
887 892Right-handed alpha
Helix 28
AD1
A
905 910Right-handed alpha
Helix 29
AD2
A
918 927Right-handed alpha
Helix 30
AD3
A
928 961Right-handed alpha
Helix 31
AD4
A
970 980Right-handed alpha
Helix 32
AD5
A
982 992Right-handed alpha
Helix 33
AD6
A
996 1000Right-handed 310
Helix 34
AD7
A
1004 1010Right-handed 310
Helix 35
AD8
A
1017 1044Right-handed alpha
Helix 36
AD9
A
1049 1072Right-handed alpha
Helix 37
AE1
A
1080 1095Right-handed alpha
Helix 38
AE2
A
1109 1138Right-handed alpha
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There are 7 sheets in PDB entry 7RD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
335 338anti-parallel
Strand 3
A
349 353anti-parallel
Strand 4
A
359 363anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
264 265anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
288 293anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
300 303anti-parallel
Strand 3
A
373 375anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 800first strand
Strand 2
A
823 827parallel
Strand 3
A
851 855parallel
Strand 4
A
769 773parallel
Strand 5
A
499 502parallel
Strand 6
A
878 880parallel
Strand 7
A
895 899parallel
Strand 8
A
913 915parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 526first strand
Strand 2
A
509 520anti-parallel
Strand 3
A
741 752anti-parallel
Strand 4
A
693 702anti-parallel
Strand 5
A
659 665anti-parallel
Strand 6
A
646 653anti-parallel
Strand 7
A
630 637anti-parallel
Strand 8
A
621 624anti-parallel
Strand 9
A
610 611anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
589 591anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il