Analysis of interatomic Contacts of Structural Units in PDB entry:
7RDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RDF entry

There is 1 chain in PDB entry 7RDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7RDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
40 44Right-handed 310
Helix 3
AA3
A
55 71Right-handed alpha
Helix 4
AA4
A
95 110Right-handed alpha
Helix 5
AA5
A
117 125Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
146 161Right-handed alpha
Helix 8
AA8
A
199 201Right-handed 310
Helix 9
AA9
A
202 211Right-handed alpha
Helix 10
AB1
A
275 290Right-handed alpha
Helix 11
AB2
A
337 350Right-handed alpha
Helix 12
AB3
A
355 361Right-handed alpha
Helix 13
AB4
A
364 369Right-handed alpha
Helix 14
AB5
A
370 373Right-handed 310
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There are 5 sheets in PDB entry 7RDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
28 31parallel
Strand 3
A
2 9parallel
Strand 4
A
188 197parallel
Strand 5
A
180 185anti-parallel
Strand 6
A
173 177anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
28 31parallel
Strand 3
A
2 9parallel
Strand 4
A
188 197parallel
Strand 5
A
324 328parallel
Strand 6
A
314 317anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
143 145anti-parallel
Strand 3
A
82 84anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
87 90anti-parallel
Strand 4
A
240 243parallel
Strand 5
A
249 253anti-parallel
Strand 6
A
256 260anti-parallel
Strand 7
A
218 227anti-parallel
Strand 8
A
265 266anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
87 90anti-parallel
Strand 4
A
240 243parallel
Strand 5
A
249 253anti-parallel
Strand 6
A
256 260anti-parallel
Strand 7
A
218 227anti-parallel
Strand 8
A
299 307anti-parallel
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