Analysis of interatomic Contacts of Structural Units in PDB entry:
7RDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RDV entry

There are 5 chains in PDB entry 7RDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	GLY 181
B	GLU 4	TRP 188
C	GLU 2	ASN 205
D	ALA 3	ASP 255
H	GLU 91	SER 102

There are 12 helices in PDB entry 7RDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed alpha
Helix 2	AA2	A	55	77	Right-handed alpha
Helix 3	AA3	B	51	53	Right-handed 310
Helix 4	AA4	B	54	63	Right-handed alpha
Helix 5	AA5	B	64	78	Right-handed alpha
Helix 6	AA6	B	78	85	Right-handed alpha
Helix 7	AA7	B	85	90	Right-handed alpha
Helix 8	AA8	C	95	99	Right-handed 310
Helix 9	AA9	D	95	99	Right-handed 310
Helix 10	AB1	D	127	131	Right-handed 310
Helix 11	AB2	D	142	150	Right-handed alpha
Helix 12	AB3	D	209	213	Right-handed alpha

There are 18 sheets in PDB entry 7RDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	4	14	anti-parallel
Strand 5	B	8	18	anti-parallel
Strand 6	B	23	32	anti-parallel
Strand 7	B	35	41	anti-parallel
Strand 8	B	47	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	132	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	174	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	115	122	anti-parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	142	144	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	115	122	anti-parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	148	150	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	174	176	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	79	84	anti-parallel
Strand 5	C	66	69	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	120	125	parallel
Strand 3	C	100	103	anti-parallel
Strand 4	C	30	44	anti-parallel
Strand 5	C	50	57	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	120	125	parallel
Strand 3	C	100	103	anti-parallel
Strand 4	C	30	44	anti-parallel
Strand 5	C	105	108	anti-parallel
Strand 6	C	115	116	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	147	152	anti-parallel
Strand 3	C	185	192	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	147	152	anti-parallel
Strand 3	C	185	192	anti-parallel
Strand 4	C	174	176	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	88	91	anti-parallel
Strand 4	D	77	79	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	120	125	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	31	44	anti-parallel
Strand 5	D	51	56	anti-parallel
Strand 6	D	67	68	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	120	125	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	114	116	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	151	161	anti-parallel
Strand 3	D	199	208	anti-parallel
Strand 4	D	181	183	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	151	161	anti-parallel
Strand 3	D	199	208	anti-parallel
Strand 4	D	188	189	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	218	225	anti-parallel
Strand 4	D	244	251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RDV