Analysis of interatomic Contacts of Structural Units in PDB entry:
7RDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RDZ entry

There are 8 chains in PDB entry 7RDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	THR 929
B	PHE 6	ALA 191
C	SER 1	GLU 73
D	SER 7	ALA 191
E	ALA 1	LEU 590
F	ALA 1	LEU 590
P	G 2	A 35
T	U 18	C 54

There are100 helices in PDB entry 7RDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	13	Right-handed alpha
Helix 2	AA2	A	76	91	Right-handed alpha
Helix 3	AA3	A	123	133	Right-handed alpha
Helix 4	AA4	A	140	149	Right-handed alpha
Helix 5	AA5	A	155	159	Right-handed 310
Helix 6	AA6	A	169	177	Right-handed alpha
Helix 7	AA7	A	178	198	Right-handed alpha
Helix 8	AA8	A	206	210	Right-handed 310
Helix 9	AA9	A	234	248	Right-handed alpha
Helix 10	AB1	A	251	260	Right-handed 310
Helix 11	AB2	A	275	286	Right-handed alpha
Helix 12	AB3	A	297	301	Right-handed 310
Helix 13	AB4	A	303	318	Right-handed alpha
Helix 14	AB5	A	319	321	Right-handed 310
Helix 15	AB6	A	322	326	Right-handed 310
Helix 16	AB7	A	367	377	Right-handed alpha
Helix 17	AB8	A	377	385	Right-handed alpha
Helix 18	AB9	A	416	426	Right-handed alpha
Helix 19	AC1	A	447	454	Right-handed alpha
Helix 20	AC2	A	455	459	Right-handed 310
Helix 21	AC3	A	465	480	Right-handed alpha
Helix 22	AC4	A	505	509	Right-handed 310
Helix 23	AC5	A	511	519	Right-handed alpha
Helix 24	AC6	A	520	532	Right-handed alpha
Helix 25	AC7	A	561	581	Right-handed alpha
Helix 26	AC8	A	596	606	Right-handed alpha
Helix 27	AC9	A	627	640	Right-handed alpha
Helix 28	AD1	A	647	662	Right-handed alpha
Helix 29	AD2	A	687	710	Right-handed alpha
Helix 30	AD3	A	717	733	Right-handed alpha
Helix 31	AD4	A	738	753	Right-handed alpha
Helix 32	AD5	A	768	774	Right-handed alpha
Helix 33	AD6	A	778	791	Right-handed alpha
Helix 34	AD7	A	795	799	Right-handed 310
Helix 35	AD8	A	804	808	Right-handed 310
Helix 36	AD9	A	833	842	Right-handed alpha
Helix 37	AE1	A	846	851	Right-handed 310
Helix 38	AE2	A	856	867	Right-handed alpha
Helix 39	AE3	A	868	872	Right-handed 310
Helix 40	AE4	A	874	903	Right-handed alpha
Helix 41	AE5	A	911	916	Right-handed 310
Helix 42	AE6	A	917	925	Right-handed alpha
Helix 43	AE7	B	9	28	Right-handed alpha
Helix 44	AE8	B	31	97	Right-handed alpha
Helix 45	AE9	B	99	110	Right-handed alpha
Helix 46	AF1	B	119	125	Right-handed alpha
Helix 47	AF2	B	134	143	Right-handed alpha
Helix 48	AF3	B	168	172	Right-handed 310
Helix 49	AF4	B	176	180	Right-handed 310
Helix 50	AF5	C	2	20	Right-handed alpha
Helix 51	AF6	C	21	24	Right-handed 310
Helix 52	AF7	C	25	41	Right-handed alpha
Helix 53	AF8	C	44	62	Right-handed alpha
Helix 54	AF9	C	67	73	Right-handed alpha
Helix 55	AG1	D	9	29	Right-handed alpha
Helix 56	AG2	D	32	82	Right-handed alpha
Helix 57	AG3	D	83	99	Right-handed alpha
Helix 58	AG4	D	100	113	Right-handed alpha
Helix 59	AG5	D	134	141	Right-handed alpha
Helix 60	AG6	D	176	180	Right-handed 310
Helix 61	AG7	E	26	37	Right-handed alpha
Helix 62	AG8	E	59	63	Right-handed 310
Helix 63	AG9	E	93	97	Right-handed 310
Helix 64	AH1	E	102	112	Right-handed alpha
Helix 65	AH2	E	116	124	Right-handed alpha
Helix 66	AH3	E	127	146	Right-handed alpha
Helix 67	AH4	E	147	149	Right-handed 310
Helix 68	AH5	E	262	264	Right-handed 310
Helix 69	AH6	E	265	275	Right-handed alpha
Helix 70	AH7	E	287	299	Right-handed alpha
Helix 71	AH8	E	311	325	Right-handed alpha
Helix 72	AH9	E	376	379	Right-handed 310
Helix 73	AI1	E	380	390	Right-handed alpha
Helix 74	AI2	E	418	422	Right-handed 310
Helix 75	AI3	E	423	432	Right-handed alpha
Helix 76	AI4	E	445	456	Right-handed alpha
Helix 77	AI5	E	489	499	Right-handed alpha
Helix 78	AI6	E	503	507	Right-handed 310
Helix 79	AI7	E	515	522	Right-handed alpha
Helix 80	AI8	E	522	527	Right-handed alpha
Helix 81	AI9	E	532	537	Right-handed alpha
Helix 82	AJ1	E	557	566	Right-handed alpha
Helix 83	AJ2	E	578	585	Right-handed alpha
Helix 84	AJ3	F	26	37	Right-handed alpha
Helix 85	AJ4	F	72	76	Right-handed 310
Helix 86	AJ5	F	102	112	Right-handed alpha
Helix 87	AJ6	F	116	125	Right-handed alpha
Helix 88	AJ7	F	127	148	Right-handed alpha
Helix 89	AJ8	F	262	264	Right-handed 310
Helix 90	AJ9	F	265	273	Right-handed alpha
Helix 91	AK1	F	287	299	Right-handed alpha
Helix 92	AK2	F	310	325	Right-handed alpha
Helix 93	AK3	F	380	390	Right-handed alpha
Helix 94	AK4	F	418	422	Right-handed 310
Helix 95	AK5	F	423	433	Right-handed alpha
Helix 96	AK6	F	445	456	Right-handed alpha
Helix 97	AK7	F	489	499	Right-handed alpha
Helix 98	AK8	F	515	526	Right-handed alpha
Helix 99	AK9	F	557	566	Right-handed alpha
Helix 100	AL1	F	578	583	Right-handed alpha

There are 32 sheets in PDB entry 7RDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	55	60	anti-parallel
Strand 3	A	64	71	anti-parallel
Strand 4	A	110	119	anti-parallel
Strand 5	A	99	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	48	53	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	43	45	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	231	233	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	A	362	363	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	B	115	116	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	560	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	668	parallel
Strand 4	A	673	675	anti-parallel
Strand 5	A	397	400	anti-parallel
Strand 6	A	386	390	anti-parallel
Strand 7	B	127	132	parallel
Strand 8	B	184	190	anti-parallel
Strand 9	B	152	160	anti-parallel
Strand 10	B	146	149	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	843	844	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	758	first strand
Strand 2	A	761	767	anti-parallel
Strand 3	A	612	616	anti-parallel
Strand 4	A	800	802	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	816	822	first strand
Strand 2	A	825	831	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	132	first strand
Strand 2	D	184	190	anti-parallel
Strand 3	D	152	160	anti-parallel
Strand 4	D	146	149	anti-parallel
Strand 5	D	142	143	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	11	12	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	25	first strand
Strand 2	E	14	16	anti-parallel
Strand 3	E	42	43	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	69	71	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	E	88	89	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	154	first strand
Strand 2	E	165	167	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	209	210	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	213	first strand
Strand 2	E	197	199	anti-parallel
Strand 3	E	181	185	anti-parallel
Strand 4	E	224	227	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	348	first strand
Strand 2	E	331	332	parallel
Strand 3	E	355	359	parallel
Strand 4	E	304	308	parallel
Strand 5	E	366	374	parallel
Strand 6	E	391	399	parallel
Strand 7	E	277	281	parallel
Strand 8	E	436	437	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	471	475	first strand
Strand 2	E	571	576	parallel
Strand 3	E	543	547	parallel
Strand 4	E	510	512	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	481	482	first strand
Strand 2	E	487	488	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	11	12	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	24	25	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	69	71	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	88	89	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	154	first strand
Strand 2	F	165	167	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	209	210	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	198	first strand
Strand 2	F	182	185	anti-parallel
Strand 3	F	224	226	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	330	332	first strand
Strand 2	F	355	359	parallel
Strand 3	F	304	308	parallel
Strand 4	F	370	374	parallel
Strand 5	F	395	399	parallel
Strand 6	F	277	281	parallel
Strand 7	F	436	437	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	367	first strand
Strand 2	F	391	392	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	470	471	first strand
Strand 2	F	571	576	parallel
Strand 3	F	474	475	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	470	471	first strand
Strand 2	F	571	576	parallel
Strand 3	F	543	547	parallel
Strand 4	F	510	512	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RDZ