Analysis of interatomic Contacts of Structural Units in PDB entry:
7RF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RF9 entry

There are 4 chains in PDB entry 7RF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	HIS 385
B	THR 3	GLU 383
C	ARG 5	GLU 380
D	TYR 6	PHE 112

There are 84 helices in PDB entry 7RF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	17	Right-handed alpha
Helix 2	AA2	A	36	42	Right-handed alpha
Helix 3	AA3	A	42	52	Right-handed alpha
Helix 4	AA4	A	54	71	Right-handed alpha
Helix 5	AA5	A	72	78	Right-handed alpha
Helix 6	AA6	A	86	101	Right-handed alpha
Helix 7	AA7	A	112	122	Right-handed alpha
Helix 8	AA8	A	132	135	Right-handed 310
Helix 9	AA9	A	136	146	Right-handed alpha
Helix 10	AB1	A	166	180	Right-handed alpha
Helix 11	AB2	A	190	194	Right-handed 310
Helix 12	AB3	A	199	208	Right-handed alpha
Helix 13	AB4	A	234	249	Right-handed alpha
Helix 14	AB5	A	253	271	Right-handed alpha
Helix 15	AB6	A	271	276	Right-handed alpha
Helix 16	AB7	A	276	292	Right-handed alpha
Helix 17	AB8	A	315	318	Right-handed 310
Helix 18	AB9	A	320	330	Right-handed alpha
Helix 19	AC1	A	339	342	Right-handed 310
Helix 20	AC2	A	345	349	Right-handed 310
Helix 21	AC3	A	360	384	Right-handed alpha
Helix 22	AC4	B	8	17	Right-handed alpha
Helix 23	AC5	B	36	42	Right-handed alpha
Helix 24	AC6	B	42	53	Right-handed alpha
Helix 25	AC7	B	54	71	Right-handed alpha
Helix 26	AC8	B	72	78	Right-handed alpha
Helix 27	AC9	B	86	101	Right-handed alpha
Helix 28	AD1	B	112	122	Right-handed alpha
Helix 29	AD2	B	132	135	Right-handed 310
Helix 30	AD3	B	136	146	Right-handed alpha
Helix 31	AD4	B	166	180	Right-handed alpha
Helix 32	AD5	B	190	194	Right-handed 310
Helix 33	AD6	B	199	208	Right-handed alpha
Helix 34	AD7	B	234	249	Right-handed alpha
Helix 35	AD8	B	253	271	Right-handed alpha
Helix 36	AD9	B	271	276	Right-handed alpha
Helix 37	AE1	B	276	292	Right-handed alpha
Helix 38	AE2	B	315	318	Right-handed 310
Helix 39	AE3	B	320	330	Right-handed alpha
Helix 40	AE4	B	339	342	Right-handed 310
Helix 41	AE5	B	345	349	Right-handed 310
Helix 42	AE6	B	360	383	Right-handed alpha
Helix 43	AE7	C	8	17	Right-handed alpha
Helix 44	AE8	C	36	42	Right-handed alpha
Helix 45	AE9	C	42	53	Right-handed alpha
Helix 46	AF1	C	54	71	Right-handed alpha
Helix 47	AF2	C	72	78	Right-handed alpha
Helix 48	AF3	C	86	101	Right-handed alpha
Helix 49	AF4	C	112	122	Right-handed alpha
Helix 50	AF5	C	132	135	Right-handed 310
Helix 51	AF6	C	136	146	Right-handed alpha
Helix 52	AF7	C	166	180	Right-handed alpha
Helix 53	AF8	C	190	194	Right-handed 310
Helix 54	AF9	C	199	208	Right-handed alpha
Helix 55	AG1	C	234	249	Right-handed alpha
Helix 56	AG2	C	253	271	Right-handed alpha
Helix 57	AG3	C	271	276	Right-handed alpha
Helix 58	AG4	C	276	292	Right-handed alpha
Helix 59	AG5	C	315	318	Right-handed 310
Helix 60	AG6	C	320	331	Right-handed alpha
Helix 61	AG7	C	339	342	Right-handed 310
Helix 62	AG8	C	345	349	Right-handed 310
Helix 63	AG9	C	360	379	Right-handed alpha
Helix 64	AH1	D	8	17	Right-handed alpha
Helix 65	AH2	D	36	42	Right-handed alpha
Helix 66	AH3	D	42	52	Right-handed alpha
Helix 67	AH4	D	54	70	Right-handed alpha
Helix 68	AH5	D	72	78	Right-handed alpha
Helix 69	AH6	D	86	101	Right-handed alpha
Helix 70	AH7	D	112	122	Right-handed alpha
Helix 71	AH8	D	132	135	Right-handed 310
Helix 72	AH9	D	136	145	Right-handed alpha
Helix 73	AI1	D	166	180	Right-handed alpha
Helix 74	AI2	D	190	194	Right-handed 310
Helix 75	AI3	D	199	208	Right-handed alpha
Helix 76	AI4	D	234	249	Right-handed alpha
Helix 77	AI5	D	253	271	Right-handed alpha
Helix 78	AI6	D	271	276	Right-handed alpha
Helix 79	AI7	D	276	292	Right-handed alpha
Helix 80	AI8	D	315	318	Right-handed 310
Helix 81	AI9	D	320	331	Right-handed alpha
Helix 82	AJ1	D	339	342	Right-handed 310
Helix 83	AJ2	D	345	349	Right-handed 310
Helix 84	AJ3	D	360	380	Right-handed alpha

There are 12 sheets in PDB entry 7RF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	333	334	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	229	233	anti-parallel
Strand 3	A	211	214	anti-parallel
Strand 4	A	183	187	parallel
Strand 5	A	151	155	parallel
Strand 6	A	105	109	parallel
Strand 7	A	126	130	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	309	313	anti-parallel
Strand 3	A	352	356	anti-parallel
Strand 4	A	336	337	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	333	334	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	229	233	anti-parallel
Strand 3	B	211	214	anti-parallel
Strand 4	B	183	187	parallel
Strand 5	B	151	155	parallel
Strand 6	B	105	109	parallel
Strand 7	B	126	130	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	352	356	anti-parallel
Strand 4	B	336	337	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	333	334	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	229	233	anti-parallel
Strand 3	C	211	214	anti-parallel
Strand 4	C	183	187	parallel
Strand 5	C	151	155	parallel
Strand 6	C	105	109	parallel
Strand 7	C	126	130	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	309	313	anti-parallel
Strand 3	C	352	356	anti-parallel
Strand 4	C	336	337	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	333	334	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	229	233	anti-parallel
Strand 3	D	211	214	anti-parallel
Strand 4	D	183	187	parallel
Strand 5	D	151	155	parallel
Strand 6	D	105	109	parallel
Strand 7	D	126	130	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	309	313	anti-parallel
Strand 3	D	352	356	anti-parallel
Strand 4	D	336	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RF9