Analysis of interatomic Contacts of Structural Units in PDB entry:
7RGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RGE entry

There is 1 chain in PDB entry 7RGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 0VAL 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7RGE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
17 19Right-handed 310
Helix 3
AA3
A
20 32Right-handed alpha
Helix 4
AA4
A
42 55Right-handed alpha
Helix 5
AA5
A
69 83Right-handed alpha
Helix 6
AA6
A
97 106Right-handed alpha
Helix 7
AA7
A
108 113Right-handed alpha
Helix 8
AA8
A
113 122Right-handed alpha
Helix 9
AA9
A
122 133Right-handed alpha
Helix 10
AB1
A
174 185Right-handed alpha
Helix 11
AB2
A
190 196Right-handed 310
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There is 1 sheet (AA1) in PDB entry 7RGE.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 90first strand
Strand 2
A
60 63parallel
Strand 3
A
35 38parallel
Strand 4
A
137 139parallel
Strand 5
A
165 167parallel
Strand 6
A
156 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il