Analysis of interatomic Contacts of Structural Units in PDB entry:
7RGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RGF entry

There are 2 chains in PDB entry 7RGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	ASP 418
B	GLN 1	ASP 418

There are 17 helices in PDB entry 7RGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	23	Right-handed alpha
Helix 2	AA2	A	26	28	Right-handed 310
Helix 3	AA3	A	29	34	Right-handed alpha
Helix 4	AA4	A	39	45	Right-handed alpha
Helix 5	AA5	A	62	68	Right-handed alpha
Helix 6	AA6	A	133	136	Right-handed 310
Helix 7	AA7	A	242	246	Right-handed 310
Helix 8	AA8	A	257	263	Right-handed alpha
Helix 9	AA9	A	350	354	Right-handed 310
Helix 10	AB1	B	18	23	Right-handed alpha
Helix 11	AB2	B	26	34	Right-handed alpha
Helix 12	AB3	B	41	45	Right-handed alpha
Helix 13	AB4	B	62	68	Right-handed alpha
Helix 14	AB5	B	133	136	Right-handed 310
Helix 15	AB6	B	242	246	Right-handed 310
Helix 16	AB7	B	257	262	Right-handed alpha
Helix 17	AB8	B	350	354	Right-handed 310

There are 18 sheets in PDB entry 7RGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	86	95	parallel
Strand 3	A	74	81	anti-parallel
Strand 4	A	36	38	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	55	57	anti-parallel
Strand 3	A	46	48	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	114	first strand
Strand 2	A	194	204	parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	138	143	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	149	155	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	237	238	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	223	first strand
Strand 2	A	302	312	parallel
Strand 3	A	286	295	anti-parallel
Strand 4	A	248	252	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	234	first strand
Strand 2	A	272	275	anti-parallel
Strand 3	A	264	266	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	326	first strand
Strand 2	A	339	346	anti-parallel
Strand 3	A	375	380	anti-parallel
Strand 4	A	366	372	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	407	417	parallel
Strand 3	A	391	400	anti-parallel
Strand 4	A	356	359	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	86	95	parallel
Strand 3	B	74	81	anti-parallel
Strand 4	B	36	38	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	55	57	anti-parallel
Strand 3	B	46	48	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	114	first strand
Strand 2	B	194	204	parallel
Strand 3	B	178	187	anti-parallel
Strand 4	B	138	143	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	149	155	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	237	238	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	223	first strand
Strand 2	B	302	312	parallel
Strand 3	B	286	295	anti-parallel
Strand 4	B	248	252	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	272	275	anti-parallel
Strand 3	B	264	266	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	326	first strand
Strand 2	B	339	346	anti-parallel
Strand 3	B	375	380	anti-parallel
Strand 4	B	366	372	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	407	417	parallel
Strand 3	B	391	400	anti-parallel
Strand 4	B	356	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RGF