Analysis of interatomic Contacts of Structural Units in PDB entry:
7RHO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RHO entry

There are 7 chains in PDB entry 7RHO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 240	LEU 446
B	PRO 241	LEU 446
D	GLY 240	LEU 446
E	ALA 239	LEU 446
F	GLY 240	LEU 446
G	GLY 240	LEU 446
J	GLY 240	LEU 254

There are 40 helices in PDB entry 7RHO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	249	255	Right-handed alpha
Helix 2	AA2	A	312	318	Right-handed alpha
Helix 3	AA3	A	357	363	Right-handed 310
Helix 4	AA4	A	417	422	Right-handed alpha
Helix 5	AA5	A	435	437	Right-handed 310
Helix 6	AA6	B	250	254	Right-handed 310
Helix 7	AA7	B	312	318	Right-handed alpha
Helix 8	AA8	B	357	363	Right-handed 310
Helix 9	AA9	B	417	422	Right-handed alpha
Helix 10	AB1	B	435	437	Right-handed 310
Helix 11	AB2	D	249	255	Right-handed alpha
Helix 12	AB3	D	312	318	Right-handed alpha
Helix 13	AB4	D	357	363	Right-handed 310
Helix 14	AB5	D	417	422	Right-handed alpha
Helix 15	AB6	D	435	439	Right-handed 310
Helix 16	AB7	E	249	255	Right-handed alpha
Helix 17	AB8	E	312	318	Right-handed alpha
Helix 18	AB9	E	357	361	Right-handed 310
Helix 19	AC1	E	417	422	Right-handed alpha
Helix 20	AC2	E	435	439	Right-handed 310
Helix 21	AC3	F	249	255	Right-handed alpha
Helix 22	AC4	F	312	318	Right-handed alpha
Helix 23	AC5	F	357	363	Right-handed 310
Helix 24	AC6	F	417	422	Right-handed alpha
Helix 25	AC7	F	435	437	Right-handed 310
Helix 26	AC8	G	249	255	Right-handed alpha
Helix 27	AC9	G	312	318	Right-handed alpha
Helix 28	AD1	G	357	363	Right-handed 310
Helix 29	AD2	G	417	423	Right-handed alpha
Helix 30	AD3	G	435	437	Right-handed 310
Helix 31	AD4	J	249	255	Right-handed alpha
Helix 32	AD5	J	312	318	Right-handed alpha
Helix 33	AD6	J	357	363	Right-handed 310
Helix 34	AD7	J	417	422	Right-handed alpha
Helix 35	AD8	J	435	439	Right-handed 310
Helix 36	AD9	K	249	255	Right-handed alpha
Helix 37	AE1	K	312	319	Right-handed alpha
Helix 38	AE2	K	357	361	Right-handed 310
Helix 39	AE3	K	417	423	Right-handed alpha
Helix 40	AE4	K	435	437	Right-handed 310

There are 47 sheets in PDB entry 7RHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	261	270	anti-parallel
Strand 3	A	302	310	anti-parallel
Strand 4	A	291	292	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	261	270	anti-parallel
Strand 3	A	302	310	anti-parallel
Strand 4	A	296	298	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	322	327	anti-parallel
Strand 4	A	335	339	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	365	375	anti-parallel
Strand 3	A	407	416	anti-parallel
Strand 4	A	394	396	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	365	375	anti-parallel
Strand 3	A	407	416	anti-parallel
Strand 4	A	400	401	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	381	386	anti-parallel
Strand 3	A	426	431	anti-parallel
Strand 4	A	439	444	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	246	first strand
Strand 2	B	261	270	anti-parallel
Strand 3	B	302	310	anti-parallel
Strand 4	B	291	292	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	246	first strand
Strand 2	B	261	270	anti-parallel
Strand 3	B	302	310	anti-parallel
Strand 4	B	296	298	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	322	327	anti-parallel
Strand 4	B	335	339	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	365	375	anti-parallel
Strand 3	B	407	416	anti-parallel
Strand 4	B	394	396	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	365	375	anti-parallel
Strand 3	B	407	416	anti-parallel
Strand 4	B	400	401	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	426	431	anti-parallel
Strand 4	B	439	444	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	246	first strand
Strand 2	D	261	270	anti-parallel
Strand 3	D	302	310	anti-parallel
Strand 4	D	291	292	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	246	first strand
Strand 2	D	261	270	anti-parallel
Strand 3	D	302	310	anti-parallel
Strand 4	D	296	298	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	287	first strand
Strand 2	D	277	282	anti-parallel
Strand 3	D	322	327	anti-parallel
Strand 4	D	335	339	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	354	first strand
Strand 2	D	365	375	anti-parallel
Strand 3	D	407	416	anti-parallel
Strand 4	D	394	396	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	354	first strand
Strand 2	D	365	375	anti-parallel
Strand 3	D	407	416	anti-parallel
Strand 4	D	400	401	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	391	first strand
Strand 2	D	381	386	anti-parallel
Strand 3	D	426	431	anti-parallel
Strand 4	D	440	444	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	246	first strand
Strand 2	E	261	269	anti-parallel
Strand 3	E	303	310	anti-parallel
Strand 4	E	291	297	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	285	287	first strand
Strand 2	E	277	282	anti-parallel
Strand 3	E	322	327	anti-parallel
Strand 4	E	335	339	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	354	first strand
Strand 2	E	365	375	anti-parallel
Strand 3	E	407	416	anti-parallel
Strand 4	E	394	396	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	354	first strand
Strand 2	E	365	375	anti-parallel
Strand 3	E	407	416	anti-parallel
Strand 4	E	400	401	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	389	391	first strand
Strand 2	E	381	386	anti-parallel
Strand 3	E	426	431	anti-parallel
Strand 4	E	440	444	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	246	first strand
Strand 2	F	261	269	anti-parallel
Strand 3	F	303	310	anti-parallel
Strand 4	F	291	292	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	246	first strand
Strand 2	F	261	269	anti-parallel
Strand 3	F	303	310	anti-parallel
Strand 4	F	296	297	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	285	287	first strand
Strand 2	F	277	282	anti-parallel
Strand 3	F	322	327	anti-parallel
Strand 4	F	335	339	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	354	first strand
Strand 2	F	365	375	anti-parallel
Strand 3	F	407	416	anti-parallel
Strand 4	F	394	396	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	354	first strand
Strand 2	F	365	375	anti-parallel
Strand 3	F	407	416	anti-parallel
Strand 4	F	400	401	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	391	first strand
Strand 2	F	381	386	anti-parallel
Strand 3	F	426	431	anti-parallel
Strand 4	F	439	444	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	246	first strand
Strand 2	G	261	269	anti-parallel
Strand 3	G	303	310	anti-parallel
Strand 4	G	291	292	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	246	first strand
Strand 2	G	261	269	anti-parallel
Strand 3	G	303	310	anti-parallel
Strand 4	G	296	297	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	285	287	first strand
Strand 2	G	276	282	anti-parallel
Strand 3	G	322	328	anti-parallel
Strand 4	G	335	339	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	354	first strand
Strand 2	G	365	375	anti-parallel
Strand 3	G	407	416	anti-parallel
Strand 4	G	394	396	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	354	first strand
Strand 2	G	365	375	anti-parallel
Strand 3	G	407	416	anti-parallel
Strand 4	G	400	401	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	389	390	first strand
Strand 2	G	381	386	anti-parallel
Strand 3	G	426	431	anti-parallel
Strand 4	G	439	444	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	242	246	first strand
Strand 2	J	261	270	anti-parallel
Strand 3	J	302	310	anti-parallel
Strand 4	J	291	292	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	242	246	first strand
Strand 2	J	261	270	anti-parallel
Strand 3	J	302	310	anti-parallel
Strand 4	J	296	297	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	285	287	first strand
Strand 2	J	277	282	anti-parallel
Strand 3	J	322	327	anti-parallel
Strand 4	J	335	339	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	350	351	first strand
Strand 2	J	365	375	anti-parallel
Strand 3	J	407	416	anti-parallel
Strand 4	J	394	396	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	350	351	first strand
Strand 2	J	365	375	anti-parallel
Strand 3	J	407	416	anti-parallel
Strand 4	J	400	401	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	389	391	first strand
Strand 2	J	381	386	anti-parallel
Strand 3	J	427	431	anti-parallel
Strand 4	J	440	442	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	242	246	first strand
Strand 2	K	261	269	anti-parallel
Strand 3	K	303	310	anti-parallel
Strand 4	K	291	292	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	242	246	first strand
Strand 2	K	261	269	anti-parallel
Strand 3	K	303	310	anti-parallel
Strand 4	K	296	297	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	285	287	first strand
Strand 2	K	276	282	anti-parallel
Strand 3	K	322	328	anti-parallel
Strand 4	K	335	339	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	350	354	first strand
Strand 2	K	365	375	anti-parallel
Strand 3	K	407	416	anti-parallel
Strand 4	K	394	396	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	350	354	first strand
Strand 2	K	365	375	anti-parallel
Strand 3	K	407	416	anti-parallel
Strand 4	K	400	401	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	389	391	first strand
Strand 2	K	381	386	anti-parallel
Strand 3	K	426	431	anti-parallel
Strand 4	K	439	444	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RHO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RHO