Analysis of interatomic Contacts of Structural Units in PDB entry:
7RI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RI3 entry

There are 3 chains in PDB entry 7RI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 6	TYR 587
B	VAL 5	TYR 587
C	VAL 5	ASP 155

There are102 helices in PDB entry 7RI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	35	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	60	66	Right-handed alpha
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	104	118	Right-handed alpha
Helix 6	AA6	A	130	134	Right-handed 310
Helix 7	AA7	A	135	142	Right-handed alpha
Helix 8	AA8	A	164	169	Right-handed alpha
Helix 9	AA9	A	170	171	Right-handed 310
Helix 10	AB1	A	172	174	Right-handed 310
Helix 11	AB2	A	181	185	Right-handed 310
Helix 12	AB3	A	188	192	Right-handed 310
Helix 13	AB4	A	201	218	Right-handed alpha
Helix 14	AB5	A	234	237	Right-handed 310
Helix 15	AB6	A	238	252	Right-handed alpha
Helix 16	AB7	A	255	260	Right-handed alpha
Helix 17	AB8	A	268	287	Right-handed alpha
Helix 18	AB9	A	298	317	Right-handed alpha
Helix 19	AC1	A	320	330	Right-handed alpha
Helix 20	AC2	A	333	339	Right-handed alpha
Helix 21	AC3	A	348	368	Right-handed alpha
Helix 22	AC4	A	376	394	Right-handed alpha
Helix 23	AC5	A	471	474	Right-handed 310
Helix 24	AC6	A	533	537	Right-handed 310
Helix 25	AC7	A	557	563	Right-handed alpha
Helix 26	AC8	B	25	33	Right-handed alpha
Helix 27	AC9	B	38	42	Right-handed 310
Helix 28	AD1	B	49	53	Right-handed 310
Helix 29	AD2	B	60	67	Right-handed alpha
Helix 30	AD3	B	99	103	Right-handed 310
Helix 31	AD4	B	104	118	Right-handed alpha
Helix 32	AD5	B	130	134	Right-handed 310
Helix 33	AD6	B	135	142	Right-handed alpha
Helix 34	AD7	B	164	169	Right-handed alpha
Helix 35	AD8	B	170	171	Right-handed 310
Helix 36	AD9	B	172	174	Right-handed 310
Helix 37	AE1	B	181	185	Right-handed 310
Helix 38	AE2	B	188	192	Right-handed 310
Helix 39	AE3	B	201	218	Right-handed alpha
Helix 40	AE4	B	234	237	Right-handed 310
Helix 41	AE5	B	238	252	Right-handed alpha
Helix 42	AE6	B	255	260	Right-handed alpha
Helix 43	AE7	B	268	287	Right-handed alpha
Helix 44	AE8	B	298	316	Right-handed alpha
Helix 45	AE9	B	320	330	Right-handed alpha
Helix 46	AF1	B	333	339	Right-handed alpha
Helix 47	AF2	B	348	368	Right-handed alpha
Helix 48	AF3	B	376	394	Right-handed alpha
Helix 49	AF4	B	471	474	Right-handed 310
Helix 50	AF5	B	557	563	Right-handed alpha
Helix 51	AF6	C	25	35	Right-handed alpha
Helix 52	AF7	C	38	42	Right-handed 310
Helix 53	AF8	C	49	53	Right-handed 310
Helix 54	AF9	C	60	67	Right-handed alpha
Helix 55	AG1	C	99	103	Right-handed 310
Helix 56	AG2	C	104	119	Right-handed alpha
Helix 57	AG3	C	130	134	Right-handed 310
Helix 58	AG4	C	135	142	Right-handed alpha
Helix 59	AG5	C	164	169	Right-handed alpha
Helix 60	AG6	C	170	171	Right-handed 310
Helix 61	AG7	C	172	174	Right-handed 310
Helix 62	AG8	C	181	185	Right-handed 310
Helix 63	AG9	C	188	192	Right-handed 310
Helix 64	AH1	C	201	218	Right-handed alpha
Helix 65	AH2	C	234	237	Right-handed 310
Helix 66	AH3	C	238	252	Right-handed alpha
Helix 67	AH4	C	255	261	Right-handed alpha
Helix 68	AH5	C	268	287	Right-handed alpha
Helix 69	AH6	C	298	316	Right-handed alpha
Helix 70	AH7	C	320	330	Right-handed alpha
Helix 71	AH8	C	333	339	Right-handed alpha
Helix 72	AH9	C	348	368	Right-handed alpha
Helix 73	AI1	C	376	394	Right-handed alpha
Helix 74	AI2	C	471	474	Right-handed 310
Helix 75	AI3	C	533	538	Right-handed alpha
Helix 76	AI4	C	557	563	Right-handed alpha
Helix 77	AI5	D	25	33	Right-handed alpha
Helix 78	AI6	D	38	42	Right-handed 310
Helix 79	AI7	D	49	53	Right-handed 310
Helix 80	AI8	D	60	66	Right-handed alpha
Helix 81	AI9	D	99	103	Right-handed 310
Helix 82	AJ1	D	104	118	Right-handed alpha
Helix 83	AJ2	D	130	134	Right-handed 310
Helix 84	AJ3	D	135	142	Right-handed alpha
Helix 85	AJ4	D	164	169	Right-handed alpha
Helix 86	AJ5	D	170	171	Right-handed 310
Helix 87	AJ6	D	172	174	Right-handed 310
Helix 88	AJ7	D	181	185	Right-handed 310
Helix 89	AJ8	D	188	192	Right-handed 310
Helix 90	AJ9	D	201	218	Right-handed alpha
Helix 91	AK1	D	234	237	Right-handed 310
Helix 92	AK2	D	238	252	Right-handed alpha
Helix 93	AK3	D	255	260	Right-handed alpha
Helix 94	AK4	D	268	287	Right-handed alpha
Helix 95	AK5	D	298	316	Right-handed alpha
Helix 96	AK6	D	320	330	Right-handed alpha
Helix 97	AK7	D	333	339	Right-handed alpha
Helix 98	AK8	D	348	368	Right-handed alpha
Helix 99	AK9	D	376	394	Right-handed alpha
Helix 100	AL1	D	471	474	Right-handed 310
Helix 101	AL2	D	533	538	Right-handed alpha
Helix 102	AL3	D	557	563	Right-handed alpha

There are 26 sheets in PDB entry 7RI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	85	91	anti-parallel
Strand 3	A	145	150	parallel
Strand 4	A	159	163	anti-parallel
Strand 5	A	55	58	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	74	79	anti-parallel
Strand 3	A	176	177	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	413	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	435	444	anti-parallel
Strand 4	A	514	522	anti-parallel
Strand 5	A	467	469	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	413	first strand
Strand 2	A	416	421	anti-parallel
Strand 3	A	435	444	anti-parallel
Strand 4	A	514	522	anti-parallel
Strand 5	A	475	477	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	584	585	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	489	first strand
Strand 2	A	497	508	anti-parallel
Strand 3	A	453	461	anti-parallel
Strand 4	A	544	548	anti-parallel
Strand 5	A	577	581	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	85	91	anti-parallel
Strand 3	B	145	152	parallel
Strand 4	B	155	163	anti-parallel
Strand 5	B	55	58	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	176	177	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	413	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	435	444	anti-parallel
Strand 4	B	514	522	anti-parallel
Strand 5	B	467	469	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	413	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	435	444	anti-parallel
Strand 4	B	514	522	anti-parallel
Strand 5	B	475	477	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	584	585	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	489	first strand
Strand 2	B	497	508	anti-parallel
Strand 3	B	453	461	anti-parallel
Strand 4	B	544	548	anti-parallel
Strand 5	B	577	581	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	13	first strand
Strand 2	C	85	91	anti-parallel
Strand 3	C	145	152	parallel
Strand 4	C	155	163	anti-parallel
Strand 5	C	55	58	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	74	79	anti-parallel
Strand 3	C	176	177	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	413	first strand
Strand 2	C	416	421	anti-parallel
Strand 3	C	435	444	anti-parallel
Strand 4	C	514	521	anti-parallel
Strand 5	C	468	469	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	413	first strand
Strand 2	C	416	421	anti-parallel
Strand 3	C	435	444	anti-parallel
Strand 4	C	514	521	anti-parallel
Strand 5	C	475	477	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	427	first strand
Strand 2	C	584	585	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	454	first strand
Strand 2	C	507	508	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	490	first strand
Strand 2	C	497	502	anti-parallel
Strand 3	C	457	461	anti-parallel
Strand 4	C	544	548	anti-parallel
Strand 5	C	577	581	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	13	first strand
Strand 2	D	85	91	anti-parallel
Strand 3	D	145	150	parallel
Strand 4	D	159	163	anti-parallel
Strand 5	D	55	58	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	74	79	anti-parallel
Strand 3	D	176	177	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	413	first strand
Strand 2	D	416	421	anti-parallel
Strand 3	D	435	444	anti-parallel
Strand 4	D	514	522	anti-parallel
Strand 5	D	467	469	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	413	first strand
Strand 2	D	416	421	anti-parallel
Strand 3	D	435	444	anti-parallel
Strand 4	D	514	522	anti-parallel
Strand 5	D	475	477	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	427	first strand
Strand 2	D	584	585	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	454	first strand
Strand 2	D	507	508	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	490	first strand
Strand 2	D	497	502	anti-parallel
Strand 3	D	457	461	anti-parallel
Strand 4	D	544	548	anti-parallel
Strand 5	D	577	581	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RI3