Analysis of interatomic Contacts of Structural Units in PDB entry:
7RI7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RI7 entry

There are 5 chains in PDB entry 7RI7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 25	ILE 806
B	PHE 23	ARG 392
C	SER 26	ALA 90
D	VAL 27	SER 243
E	ARG 25	LEU 110

There are 26 helices in PDB entry 7RI7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	68	Right-handed alpha
Helix 3	AA3	A	106	116	Right-handed alpha
Helix 4	AA4	A	128	145	Right-handed alpha
Helix 5	AA5	A	189	196	Right-handed alpha
Helix 6	AA6	A	204	208	Right-handed 310
Helix 7	AA7	A	215	233	Right-handed alpha
Helix 8	AA8	A	280	288	Right-handed alpha
Helix 9	AA9	A	297	314	Right-handed alpha
Helix 10	AB1	A	361	368	Right-handed alpha
Helix 11	AB2	A	378	393	Right-handed alpha
Helix 12	AB3	A	542	552	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	D	31	46	Right-handed alpha
Helix 15	AB6	D	47	62	Right-handed alpha
Helix 16	AB7	D	65	83	Right-handed alpha
Helix 17	AB8	D	84	99	Right-handed alpha
Helix 18	AB9	D	104	121	Right-handed alpha
Helix 19	AC1	D	123	128	Right-handed alpha
Helix 20	AC2	D	137	154	Right-handed alpha
Helix 21	AC3	D	159	189	Right-handed alpha
Helix 22	AC4	D	190	205	Right-handed alpha
Helix 23	AC5	D	208	226	Right-handed alpha
Helix 24	AC6	D	227	242	Right-handed alpha
Helix 25	AC7	E	39	45	Right-handed alpha
Helix 26	AC8	E	51	59	Right-handed alpha

There are 22 sheets in PDB entry 7RI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	83	86	parallel
Strand 3	A	77	79	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	163	169	parallel
Strand 3	A	151	152	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	163	169	parallel
Strand 3	A	155	157	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	255	258	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	334	338	parallel
Strand 3	A	325	329	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	341	342	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	412	417	parallel
Strand 3	A	401	404	anti-parallel

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There are 14 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	455	462	anti-parallel
Strand 3	A	466	474	anti-parallel
Strand 4	A	484	494	anti-parallel
Strand 5	A	508	516	anti-parallel
Strand 6	A	523	536	anti-parallel
Strand 7	A	565	580	anti-parallel
Strand 8	A	591	600	anti-parallel
Strand 9	A	609	620	anti-parallel
Strand 10	A	628	639	anti-parallel
Strand 11	A	713	716	anti-parallel
Strand 12	A	733	742	anti-parallel
Strand 13	A	767	778	anti-parallel
Strand 14	A	781	782	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	711	first strand
Strand 2	A	628	639	anti-parallel
Strand 3	A	713	716	anti-parallel
Strand 4	A	733	742	anti-parallel
Strand 5	A	767	778	anti-parallel
Strand 6	A	785	790	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	387	389	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	71	74	anti-parallel
Strand 3	B	82	85	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	143	146	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	163	anti-parallel
Strand 3	B	170	174	anti-parallel
Strand 4	B	182	186	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	206	207	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	225	226	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	292	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	304	309	anti-parallel
Strand 4	B	315	316	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	349	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	79	80	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	77	first strand
Strand 2	E	89	95	anti-parallel
Strand 3	E	102	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RI7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RI7