Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RJ5 entry

There are 6 chains in PDB entry 7RJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 1192	PHE 1300
A	PHE 24	TRP 810
B	CYS 20	ARG 392
C	CYS 25	ALA 90
D	CYS 20	SER 243
E	CYS 20	LEU 110

There are 25 helices in PDB entry 7RJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	68	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	126	145	Right-handed alpha
Helix 5	AA5	A	189	196	Right-handed alpha
Helix 6	AA6	A	215	233	Right-handed alpha
Helix 7	AA7	A	279	289	Right-handed alpha
Helix 8	AA8	A	297	316	Right-handed alpha
Helix 9	AA9	A	361	369	Right-handed alpha
Helix 10	AB1	A	378	393	Right-handed alpha
Helix 11	AB2	A	542	552	Right-handed alpha
Helix 12	AB3	A	726	732	Right-handed alpha
Helix 13	AB4	C	38	43	Right-handed alpha
Helix 14	AB5	D	31	46	Right-handed alpha
Helix 15	AB6	D	47	62	Right-handed alpha
Helix 16	AB7	D	66	82	Right-handed alpha
Helix 17	AB8	D	84	99	Right-handed alpha
Helix 18	AB9	D	104	118	Right-handed alpha
Helix 19	AC1	D	137	154	Right-handed alpha
Helix 20	AC2	D	157	188	Right-handed alpha
Helix 21	AC3	D	190	205	Right-handed alpha
Helix 22	AC4	D	208	225	Right-handed alpha
Helix 23	AC5	D	227	241	Right-handed alpha
Helix 24	AC6	E	39	45	Right-handed alpha
Helix 25	AC7	E	51	60	Right-handed alpha

There are 19 sheets in PDB entry 7RJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1219	1221	first strand
Strand 2	G	1260	1268	anti-parallel
Strand 3	G	1272	1280	anti-parallel
Strand 4	G	1291	1298	anti-parallel
Strand 5	A	430	431	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1226	1228	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	781	790	anti-parallel
Strand 4	A	769	778	anti-parallel
Strand 5	A	733	738	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	84	87	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	165	169	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	254	259	parallel
Strand 3	A	244	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	294	295	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	329	first strand
Strand 2	A	334	342	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	355	first strand
Strand 2	A	412	417	parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	457	462	anti-parallel
Strand 4	A	466	474	anti-parallel
Strand 5	A	486	494	anti-parallel
Strand 6	A	506	520	anti-parallel
Strand 7	A	523	539	anti-parallel
Strand 8	A	563	579	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	620	anti-parallel
Strand 11	A	628	640	anti-parallel
Strand 12	A	710	717	anti-parallel
Strand 13	A	743	745	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	674	first strand
Strand 2	A	700	701	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	387	391	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	141	144	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	184	186	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	228	231	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	268	271	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	304	305	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	338	anti-parallel
Strand 3	B	346	349	anti-parallel
Strand 4	B	359	360	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	374	first strand
Strand 2	B	377	379	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	91	93	anti-parallel
Strand 3	E	104	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJ5