Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RJA entry

There are 18 chains in PDB entry 7RJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 22	MET 437
K	MET 1	GLN 383
D	MET 43	PRO 286
G	VAL 2	ILE 123
F	THR 9	VAL 93
H	ALA 63	LEU 134
I	ALA 17	LEU 55
C	ASN 31	LEU 211
B	SER 11	LEU 374
J	LYS 22	MET 437
T	MET 1	GLN 383
N	MET 43	PRO 286
Q	VAL 2	ILE 123
P	THR 9	VAL 93
R	ALA 63	LEU 134
S	ALA 17	LEU 55
M	ASN 31	LEU 211
L	SER 11	LEU 374

There are183 helices in PDB entry 7RJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	29	Right-handed 310
Helix 2	AA2	A	52	56	Right-handed 310
Helix 3	AA3	A	62	73	Right-handed alpha
Helix 4	AA4	A	97	99	Right-handed 310
Helix 5	AA5	A	100	114	Right-handed alpha
Helix 6	AA6	A	114	121	Right-handed alpha
Helix 7	AA7	A	123	139	Right-handed alpha
Helix 8	AA8	A	141	155	Right-handed alpha
Helix 9	AA9	A	158	162	Right-handed 310
Helix 10	AB1	A	167	172	Right-handed alpha
Helix 11	AB2	A	175	187	Right-handed alpha
Helix 12	AB3	A	188	191	Right-handed 310
Helix 13	AB4	A	201	211	Right-handed alpha
Helix 14	AB5	A	258	270	Right-handed alpha
Helix 15	AB6	A	276	281	Right-handed 310
Helix 16	AB7	A	284	291	Right-handed alpha
Helix 17	AB8	A	320	322	Right-handed 310
Helix 18	AB9	A	323	339	Right-handed alpha
Helix 19	AC1	A	343	362	Right-handed alpha
Helix 20	AC2	A	364	379	Right-handed alpha
Helix 21	AC3	A	384	394	Right-handed alpha
Helix 22	AC4	A	396	408	Right-handed alpha
Helix 23	AC5	A	420	424	Right-handed 310
Helix 24	AC6	A	426	433	Right-handed alpha
Helix 25	AC7	K	2	7	Right-handed alpha
Helix 26	AC8	K	7	18	Right-handed alpha
Helix 27	AC9	K	28	30	Right-handed 310
Helix 28	AD1	K	31	52	Right-handed alpha
Helix 29	AD2	K	60	71	Right-handed alpha
Helix 30	AD3	K	74	103	Right-handed alpha
Helix 31	AD4	K	107	109	Right-handed 310
Helix 32	AD5	K	110	136	Right-handed alpha
Helix 33	AD6	K	137	152	Right-handed alpha
Helix 34	AD7	K	157	167	Right-handed alpha
Helix 35	AD8	K	172	205	Right-handed alpha
Helix 36	AD9	K	225	245	Right-handed alpha
Helix 37	AE1	K	253	258	Right-handed 310
Helix 38	AE2	K	272	274	Right-handed 310
Helix 39	AE3	K	275	285	Right-handed alpha
Helix 40	AE4	K	287	309	Right-handed alpha
Helix 41	AE5	K	319	342	Right-handed alpha
Helix 42	AE6	K	345	365	Right-handed alpha
Helix 43	AE7	K	365	383	Right-handed alpha
Helix 44	AE8	D	44	49	Right-handed alpha
Helix 45	AE9	D	67	81	Right-handed alpha
Helix 46	AF1	D	82	85	Right-handed 310
Helix 47	AF2	D	92	97	Right-handed 310
Helix 48	AF3	D	102	112	Right-handed alpha
Helix 49	AF4	D	142	150	Right-handed alpha
Helix 50	AF5	D	157	161	Right-handed 310
Helix 51	AF6	D	168	177	Right-handed alpha
Helix 52	AF7	D	224	241	Right-handed alpha
Helix 53	AF8	D	243	278	Right-handed alpha
Helix 54	AF9	G	4	18	Right-handed alpha
Helix 55	AG1	G	18	37	Right-handed alpha
Helix 56	AG2	G	38	42	Right-handed 310
Helix 57	AG3	G	44	48	Right-handed 310
Helix 58	AG4	G	53	62	Right-handed alpha
Helix 59	AG5	G	64	85	Right-handed alpha
Helix 60	AG6	G	103	122	Right-handed alpha
Helix 61	AG7	F	40	82	Right-handed alpha
Helix 62	AG8	F	86	93	Right-handed alpha
Helix 63	AG9	H	64	75	Right-handed alpha
Helix 64	AH1	H	79	99	Right-handed alpha
Helix 65	AH2	H	101	105	Right-handed 310
Helix 66	AH3	H	111	131	Right-handed alpha
Helix 67	AH4	H	132	134	Right-handed 310
Helix 68	AH5	I	18	42	Right-handed alpha
Helix 69	AH6	I	46	55	Right-handed alpha
Helix 70	AH7	C	45	80	Right-handed alpha
Helix 71	AH8	C	82	89	Right-handed alpha
Helix 72	AH9	C	119	128	Right-handed alpha
Helix 73	AI1	C	139	144	Right-handed alpha
Helix 74	AI2	B	46	55	Right-handed alpha
Helix 75	AI3	B	63	75	Right-handed alpha
Helix 76	AI4	B	97	110	Right-handed alpha
Helix 77	AI5	B	115	122	Right-handed alpha
Helix 78	AI6	B	123	136	Right-handed alpha
Helix 79	AI7	B	137	151	Right-handed alpha
Helix 80	AI8	B	153	157	Right-handed 310
Helix 81	AI9	B	168	177	Right-handed alpha
Helix 82	AJ1	B	181	183	Right-handed 310
Helix 83	AJ2	B	193	204	Right-handed alpha
Helix 84	AJ3	B	205	209	Right-handed 310
Helix 85	AJ4	B	247	249	Right-handed 310
Helix 86	AJ5	B	250	262	Right-handed alpha
Helix 87	AJ6	B	271	276	Right-handed 310
Helix 88	AJ7	B	299	315	Right-handed alpha
Helix 89	AJ8	B	318	325	Right-handed alpha
Helix 90	AJ9	B	325	337	Right-handed alpha
Helix 91	AK1	B	370	374	Right-handed 310
Helix 92	AK2	J	27	29	Right-handed 310
Helix 93	AK3	J	52	56	Right-handed 310
Helix 94	AK4	J	57	61	Right-handed 310
Helix 95	AK5	J	62	73	Right-handed alpha
Helix 96	AK6	J	100	114	Right-handed alpha
Helix 97	AK7	J	114	121	Right-handed alpha
Helix 98	AK8	J	123	139	Right-handed alpha
Helix 99	AK9	J	141	155	Right-handed alpha
Helix 100	AL1	J	158	162	Right-handed 310
Helix 101	AL2	J	170	174	Right-handed 310
Helix 102	AL3	J	175	187	Right-handed alpha
Helix 103	AL4	J	188	191	Right-handed 310
Helix 104	AL5	J	201	211	Right-handed alpha
Helix 105	AL6	J	258	270	Right-handed alpha
Helix 106	AL7	J	276	281	Right-handed 310
Helix 107	AL8	J	284	291	Right-handed alpha
Helix 108	AL9	J	323	337	Right-handed alpha
Helix 109	AM1	J	338	340	Right-handed 310
Helix 110	AM2	J	343	362	Right-handed alpha
Helix 111	AM3	J	364	379	Right-handed alpha
Helix 112	AM4	J	384	394	Right-handed alpha
Helix 113	AM5	J	396	408	Right-handed alpha
Helix 114	AM6	J	420	424	Right-handed 310
Helix 115	AM7	J	426	433	Right-handed alpha
Helix 116	AM8	T	2	7	Right-handed alpha
Helix 117	AM9	T	7	17	Right-handed alpha
Helix 118	AN1	T	28	30	Right-handed 310
Helix 119	AN2	T	31	52	Right-handed alpha
Helix 120	AN3	T	57	71	Right-handed alpha
Helix 121	AN4	T	74	103	Right-handed alpha
Helix 122	AN5	T	107	109	Right-handed 310
Helix 123	AN6	T	110	136	Right-handed alpha
Helix 124	AN7	T	137	152	Right-handed alpha
Helix 125	AN8	T	157	167	Right-handed alpha
Helix 126	AN9	T	172	205	Right-handed alpha
Helix 127	AO1	T	226	246	Right-handed alpha
Helix 128	AO2	T	253	258	Right-handed 310
Helix 129	AO3	T	272	274	Right-handed 310
Helix 130	AO4	T	275	285	Right-handed alpha
Helix 131	AO5	T	287	309	Right-handed alpha
Helix 132	AO6	T	319	342	Right-handed alpha
Helix 133	AO7	T	345	365	Right-handed alpha
Helix 134	AO8	T	365	383	Right-handed alpha
Helix 135	AO9	N	44	49	Right-handed alpha
Helix 136	AP1	N	67	81	Right-handed alpha
Helix 137	AP2	N	82	85	Right-handed 310
Helix 138	AP3	N	92	97	Right-handed 310
Helix 139	AP4	N	102	113	Right-handed alpha
Helix 140	AP5	N	142	150	Right-handed alpha
Helix 141	AP6	N	168	177	Right-handed alpha
Helix 142	AP7	N	224	241	Right-handed alpha
Helix 143	AP8	N	243	278	Right-handed alpha
Helix 144	AP9	Q	4	18	Right-handed alpha
Helix 145	AQ1	Q	18	36	Right-handed alpha
Helix 146	AQ2	Q	38	42	Right-handed 310
Helix 147	AQ3	Q	44	49	Right-handed alpha
Helix 148	AQ4	Q	53	62	Right-handed alpha
Helix 149	AQ5	Q	64	85	Right-handed alpha
Helix 150	AQ6	Q	103	122	Right-handed alpha
Helix 151	AQ7	P	32	35	Right-handed 310
Helix 152	AQ8	P	40	82	Right-handed alpha
Helix 153	AQ9	P	83	85	Right-handed 310
Helix 154	AR1	P	86	93	Right-handed alpha
Helix 155	AR2	R	64	75	Right-handed alpha
Helix 156	AR3	R	79	99	Right-handed alpha
Helix 157	AR4	R	100	105	Right-handed 310
Helix 158	AR5	R	111	131	Right-handed alpha
Helix 159	AR6	R	132	134	Right-handed 310
Helix 160	AR7	S	18	42	Right-handed alpha
Helix 161	AR8	S	46	55	Right-handed alpha
Helix 162	AR9	M	45	80	Right-handed alpha
Helix 163	AS1	M	82	89	Right-handed alpha
Helix 164	AS2	M	119	128	Right-handed alpha
Helix 165	AS3	M	139	144	Right-handed alpha
Helix 166	AS4	L	46	55	Right-handed alpha
Helix 167	AS5	L	63	74	Right-handed alpha
Helix 168	AS6	L	97	110	Right-handed alpha
Helix 169	AS7	L	115	122	Right-handed alpha
Helix 170	AS8	L	123	136	Right-handed alpha
Helix 171	AS9	L	137	151	Right-handed alpha
Helix 172	AT1	L	153	157	Right-handed 310
Helix 173	AT2	L	168	177	Right-handed alpha
Helix 174	AT3	L	181	183	Right-handed 310
Helix 175	AT4	L	193	204	Right-handed alpha
Helix 176	AT5	L	205	209	Right-handed 310
Helix 177	AT6	L	247	249	Right-handed 310
Helix 178	AT7	L	250	262	Right-handed alpha
Helix 179	AT8	L	271	276	Right-handed 310
Helix 180	AT9	L	299	315	Right-handed alpha
Helix 181	AU1	L	318	325	Right-handed alpha
Helix 182	AU2	L	325	337	Right-handed alpha
Helix 183	AU3	L	370	374	Right-handed 310

There are 20 sheets in PDB entry 7RJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	193	198	parallel
Strand 4	A	43	48	anti-parallel
Strand 5	A	91	96	anti-parallel
Strand 6	A	80	83	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	310	318	anti-parallel
Strand 4	A	243	250	anti-parallel
Strand 5	A	413	417	anti-parallel
Strand 6	A	231	234	parallel
Strand 7	F	25	30	anti-parallel
Strand 8	D	280	283	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	23	first strand
Strand 2	K	218	219	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	117	first strand
Strand 2	D	126	129	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	203	204	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	180	182	anti-parallel
Strand 3	C	188	190	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	208	210	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	185	190	parallel
Strand 3	B	32	35	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	28	29	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	185	190	parallel
Strand 3	B	32	35	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	77	82	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	358	363	parallel
Strand 3	B	238	246	anti-parallel
Strand 4	B	290	298	anti-parallel
Strand 5	B	280	285	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	25	first strand
Strand 2	J	31	36	anti-parallel
Strand 3	J	193	198	parallel
Strand 4	J	43	48	anti-parallel
Strand 5	J	91	96	anti-parallel
Strand 6	J	80	83	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	271	273	first strand
Strand 2	J	298	305	anti-parallel
Strand 3	J	310	318	anti-parallel
Strand 4	J	243	250	anti-parallel
Strand 5	J	413	417	anti-parallel
Strand 6	J	231	234	parallel
Strand 7	P	25	30	anti-parallel
Strand 8	N	280	283	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	22	23	first strand
Strand 2	T	218	219	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	117	first strand
Strand 2	N	126	129	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	194	195	first strand
Strand 2	N	203	204	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	174	175	first strand
Strand 2	M	180	182	anti-parallel
Strand 3	M	188	190	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	203	205	first strand
Strand 2	M	208	210	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	22	first strand
Strand 2	L	185	190	parallel
Strand 3	L	32	35	anti-parallel
Strand 4	L	87	94	anti-parallel
Strand 5	L	28	29	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	22	first strand
Strand 2	L	185	190	parallel
Strand 3	L	32	35	anti-parallel
Strand 4	L	87	94	anti-parallel
Strand 5	L	77	82	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	229	233	first strand
Strand 2	L	358	363	parallel
Strand 3	L	238	246	anti-parallel
Strand 4	L	290	298	anti-parallel
Strand 5	L	280	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJA