Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RJD entry

There are 10 chains in PDB entry 7RJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	PHE 75	LEU 211
A	LYS 22	MET 437
K	MET 1	GLN 383
D	MET 43	PRO 286
G	VAL 2	ILE 123
F	THR 9	VAL 93
H	ALA 63	LEU 134
I	ALA 17	LEU 55
B	SER 11	LEU 374
M	ASN 31	ALA 80

There are 91 helices in PDB entry 7RJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	76	80	Right-handed 310
Helix 2	AA2	E	119	129	Right-handed alpha
Helix 3	AA3	E	139	144	Right-handed alpha
Helix 4	AA4	A	27	29	Right-handed 310
Helix 5	AA5	A	52	56	Right-handed 310
Helix 6	AA6	A	62	73	Right-handed alpha
Helix 7	AA7	A	97	99	Right-handed 310
Helix 8	AA8	A	100	114	Right-handed alpha
Helix 9	AA9	A	114	121	Right-handed alpha
Helix 10	AB1	A	123	139	Right-handed alpha
Helix 11	AB2	A	141	155	Right-handed alpha
Helix 12	AB3	A	158	162	Right-handed 310
Helix 13	AB4	A	167	172	Right-handed alpha
Helix 14	AB5	A	175	187	Right-handed alpha
Helix 15	AB6	A	188	191	Right-handed 310
Helix 16	AB7	A	201	211	Right-handed alpha
Helix 17	AB8	A	258	270	Right-handed alpha
Helix 18	AB9	A	276	281	Right-handed 310
Helix 19	AC1	A	284	291	Right-handed alpha
Helix 20	AC2	A	320	322	Right-handed 310
Helix 21	AC3	A	323	339	Right-handed alpha
Helix 22	AC4	A	343	362	Right-handed alpha
Helix 23	AC5	A	364	379	Right-handed alpha
Helix 24	AC6	A	384	394	Right-handed alpha
Helix 25	AC7	A	396	408	Right-handed alpha
Helix 26	AC8	A	420	424	Right-handed 310
Helix 27	AC9	A	426	433	Right-handed alpha
Helix 28	AD1	K	2	7	Right-handed alpha
Helix 29	AD2	K	7	18	Right-handed alpha
Helix 30	AD3	K	28	30	Right-handed 310
Helix 31	AD4	K	31	52	Right-handed alpha
Helix 32	AD5	K	60	71	Right-handed alpha
Helix 33	AD6	K	74	103	Right-handed alpha
Helix 34	AD7	K	107	109	Right-handed 310
Helix 35	AD8	K	110	136	Right-handed alpha
Helix 36	AD9	K	137	152	Right-handed alpha
Helix 37	AE1	K	157	167	Right-handed alpha
Helix 38	AE2	K	172	205	Right-handed alpha
Helix 39	AE3	K	225	245	Right-handed alpha
Helix 40	AE4	K	253	258	Right-handed 310
Helix 41	AE5	K	272	274	Right-handed 310
Helix 42	AE6	K	275	285	Right-handed alpha
Helix 43	AE7	K	287	309	Right-handed alpha
Helix 44	AE8	K	319	342	Right-handed alpha
Helix 45	AE9	K	345	365	Right-handed alpha
Helix 46	AF1	K	365	383	Right-handed alpha
Helix 47	AF2	D	44	49	Right-handed alpha
Helix 48	AF3	D	67	81	Right-handed alpha
Helix 49	AF4	D	82	85	Right-handed 310
Helix 50	AF5	D	92	97	Right-handed 310
Helix 51	AF6	D	102	112	Right-handed alpha
Helix 52	AF7	D	142	150	Right-handed alpha
Helix 53	AF8	D	157	161	Right-handed 310
Helix 54	AF9	D	168	177	Right-handed alpha
Helix 55	AG1	D	224	241	Right-handed alpha
Helix 56	AG2	D	243	278	Right-handed alpha
Helix 57	AG3	G	4	18	Right-handed alpha
Helix 58	AG4	G	18	37	Right-handed alpha
Helix 59	AG5	G	38	42	Right-handed 310
Helix 60	AG6	G	44	48	Right-handed 310
Helix 61	AG7	G	53	62	Right-handed alpha
Helix 62	AG8	G	64	85	Right-handed alpha
Helix 63	AG9	G	103	122	Right-handed alpha
Helix 64	AH1	F	40	82	Right-handed alpha
Helix 65	AH2	F	86	93	Right-handed alpha
Helix 66	AH3	H	64	75	Right-handed alpha
Helix 67	AH4	H	79	99	Right-handed alpha
Helix 68	AH5	H	101	105	Right-handed 310
Helix 69	AH6	H	111	131	Right-handed alpha
Helix 70	AH7	H	132	134	Right-handed 310
Helix 71	AH8	I	18	42	Right-handed alpha
Helix 72	AH9	I	46	55	Right-handed alpha
Helix 73	AI1	B	46	55	Right-handed alpha
Helix 74	AI2	B	63	75	Right-handed alpha
Helix 75	AI3	B	97	110	Right-handed alpha
Helix 76	AI4	B	115	122	Right-handed alpha
Helix 77	AI5	B	123	136	Right-handed alpha
Helix 78	AI6	B	137	151	Right-handed alpha
Helix 79	AI7	B	153	157	Right-handed 310
Helix 80	AI8	B	168	177	Right-handed alpha
Helix 81	AI9	B	181	183	Right-handed 310
Helix 82	AJ1	B	193	204	Right-handed alpha
Helix 83	AJ2	B	205	209	Right-handed 310
Helix 84	AJ3	B	247	249	Right-handed 310
Helix 85	AJ4	B	250	262	Right-handed alpha
Helix 86	AJ5	B	271	276	Right-handed 310
Helix 87	AJ6	B	299	315	Right-handed alpha
Helix 88	AJ7	B	318	325	Right-handed alpha
Helix 89	AJ8	B	325	337	Right-handed alpha
Helix 90	AJ9	B	370	374	Right-handed 310
Helix 91	AK1	M	45	80	Right-handed alpha

There are 11 sheets in PDB entry 7RJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	94	first strand
Strand 2	E	208	209	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	108	first strand
Strand 2	E	111	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	175	first strand
Strand 2	E	180	182	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	193	198	parallel
Strand 4	A	43	48	anti-parallel
Strand 5	A	91	96	anti-parallel
Strand 6	A	80	83	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	310	318	anti-parallel
Strand 4	A	243	250	anti-parallel
Strand 5	A	413	417	anti-parallel
Strand 6	A	231	234	parallel
Strand 7	F	25	30	anti-parallel
Strand 8	D	280	283	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	23	first strand
Strand 2	K	218	219	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	117	first strand
Strand 2	D	126	129	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	203	204	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	185	190	parallel
Strand 3	B	32	35	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	28	29	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	185	190	parallel
Strand 3	B	32	35	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	77	82	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	358	363	parallel
Strand 3	B	238	246	anti-parallel
Strand 4	B	290	298	anti-parallel
Strand 5	B	280	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJD