Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RJE entry

There are 18 chains in PDB entry 7RJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	MET 1	THR 384
T	MET 1	THR 384
A	GLY 20	MET 436
B	SER 11	LEU 374
D	THR 44	PRO 286
G	VAL 2	ILE 123
F	PRO 7	ASN 94
H	ALA 63	LEU 134
I	THR 18	LEU 55
E	GLY 20	MET 436
L	SER 11	LEU 374
N	THR 44	PRO 286
P	VAL 2	ILE 123
O	PRO 7	ASN 94
Q	ALA 63	LEU 134
R	THR 18	LEU 55
C	ASN 31	LEU 211
M	ASN 31	LEU 211

There are183 helices in PDB entry 7RJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	2	7	Right-handed alpha
Helix 2	AA2	K	7	18	Right-handed alpha
Helix 3	AA3	K	27	30	Right-handed 310
Helix 4	AA4	K	31	52	Right-handed alpha
Helix 5	AA5	K	57	71	Right-handed alpha
Helix 6	AA6	K	74	103	Right-handed alpha
Helix 7	AA7	K	107	109	Right-handed 310
Helix 8	AA8	K	110	135	Right-handed alpha
Helix 9	AA9	K	137	152	Right-handed alpha
Helix 10	AB1	K	157	167	Right-handed alpha
Helix 11	AB2	K	172	205	Right-handed alpha
Helix 12	AB3	K	213	216	Right-handed 310
Helix 13	AB4	K	223	247	Right-handed alpha
Helix 14	AB5	K	253	258	Right-handed 310
Helix 15	AB6	K	272	274	Right-handed 310
Helix 16	AB7	K	275	285	Right-handed alpha
Helix 17	AB8	K	287	309	Right-handed alpha
Helix 18	AB9	K	319	342	Right-handed alpha
Helix 19	AC1	K	345	365	Right-handed alpha
Helix 20	AC2	K	365	383	Right-handed alpha
Helix 21	AC3	T	2	7	Right-handed alpha
Helix 22	AC4	T	7	18	Right-handed alpha
Helix 23	AC5	T	27	30	Right-handed 310
Helix 24	AC6	T	31	52	Right-handed alpha
Helix 25	AC7	T	57	71	Right-handed alpha
Helix 26	AC8	T	74	103	Right-handed alpha
Helix 27	AC9	T	107	109	Right-handed 310
Helix 28	AD1	T	110	135	Right-handed alpha
Helix 29	AD2	T	137	152	Right-handed alpha
Helix 30	AD3	T	157	167	Right-handed alpha
Helix 31	AD4	T	172	205	Right-handed alpha
Helix 32	AD5	T	213	216	Right-handed 310
Helix 33	AD6	T	223	247	Right-handed alpha
Helix 34	AD7	T	253	258	Right-handed 310
Helix 35	AD8	T	272	274	Right-handed 310
Helix 36	AD9	T	275	285	Right-handed alpha
Helix 37	AE1	T	287	301	Right-handed alpha
Helix 38	AE2	T	304	309	Right-handed alpha
Helix 39	AE3	T	319	342	Right-handed alpha
Helix 40	AE4	T	345	365	Right-handed alpha
Helix 41	AE5	T	365	383	Right-handed alpha
Helix 42	AE6	A	52	56	Right-handed 310
Helix 43	AE7	A	57	61	Right-handed 310
Helix 44	AE8	A	62	73	Right-handed alpha
Helix 45	AE9	A	97	99	Right-handed 310
Helix 46	AF1	A	100	114	Right-handed alpha
Helix 47	AF2	A	114	122	Right-handed alpha
Helix 48	AF3	A	123	141	Right-handed alpha
Helix 49	AF4	A	141	155	Right-handed alpha
Helix 50	AF5	A	158	162	Right-handed 310
Helix 51	AF6	A	167	173	Right-handed alpha
Helix 52	AF7	A	175	187	Right-handed alpha
Helix 53	AF8	A	188	190	Right-handed 310
Helix 54	AF9	A	201	211	Right-handed alpha
Helix 55	AG1	A	258	270	Right-handed alpha
Helix 56	AG2	A	278	282	Right-handed 310
Helix 57	AG3	A	284	291	Right-handed alpha
Helix 58	AG4	A	320	322	Right-handed 310
Helix 59	AG5	A	323	337	Right-handed alpha
Helix 60	AG6	A	343	362	Right-handed alpha
Helix 61	AG7	A	364	379	Right-handed alpha
Helix 62	AG8	A	384	394	Right-handed alpha
Helix 63	AG9	A	396	408	Right-handed alpha
Helix 64	AH1	A	421	424	Right-handed 310
Helix 65	AH2	A	426	433	Right-handed alpha
Helix 66	AH3	B	46	55	Right-handed alpha
Helix 67	AH4	B	63	74	Right-handed alpha
Helix 68	AH5	B	94	96	Right-handed 310
Helix 69	AH6	B	97	110	Right-handed alpha
Helix 70	AH7	B	115	122	Right-handed alpha
Helix 71	AH8	B	123	136	Right-handed alpha
Helix 72	AH9	B	137	151	Right-handed alpha
Helix 73	AI1	B	153	157	Right-handed 310
Helix 74	AI2	B	168	177	Right-handed alpha
Helix 75	AI3	B	181	183	Right-handed 310
Helix 76	AI4	B	193	203	Right-handed alpha
Helix 77	AI5	B	204	209	Right-handed 310
Helix 78	AI6	B	247	249	Right-handed 310
Helix 79	AI7	B	250	262	Right-handed alpha
Helix 80	AI8	B	299	315	Right-handed alpha
Helix 81	AI9	B	318	337	Right-handed alpha
Helix 82	AJ1	B	370	374	Right-handed 310
Helix 83	AJ2	D	45	49	Right-handed alpha
Helix 84	AJ3	D	67	81	Right-handed alpha
Helix 85	AJ4	D	82	85	Right-handed 310
Helix 86	AJ5	D	92	97	Right-handed alpha
Helix 87	AJ6	D	102	113	Right-handed alpha
Helix 88	AJ7	D	142	150	Right-handed alpha
Helix 89	AJ8	D	168	179	Right-handed alpha
Helix 90	AJ9	D	224	241	Right-handed alpha
Helix 91	AK1	D	243	278	Right-handed alpha
Helix 92	AK2	G	4	17	Right-handed alpha
Helix 93	AK3	G	18	36	Right-handed alpha
Helix 94	AK4	G	38	42	Right-handed 310
Helix 95	AK5	G	44	49	Right-handed alpha
Helix 96	AK6	G	53	62	Right-handed alpha
Helix 97	AK7	G	64	85	Right-handed alpha
Helix 98	AK8	G	95	99	Right-handed 310
Helix 99	AK9	G	103	122	Right-handed alpha
Helix 100	AL1	F	32	35	Right-handed 310
Helix 101	AL2	F	40	83	Right-handed alpha
Helix 102	AL3	F	86	94	Right-handed alpha
Helix 103	AL4	H	64	74	Right-handed alpha
Helix 104	AL5	H	79	99	Right-handed alpha
Helix 105	AL6	H	100	104	Right-handed 310
Helix 106	AL7	H	111	134	Right-handed alpha
Helix 107	AL8	I	19	42	Right-handed alpha
Helix 108	AL9	I	43	45	Right-handed 310
Helix 109	AM1	I	46	55	Right-handed alpha
Helix 110	AM2	E	52	56	Right-handed 310
Helix 111	AM3	E	57	61	Right-handed 310
Helix 112	AM4	E	62	73	Right-handed alpha
Helix 113	AM5	E	97	99	Right-handed 310
Helix 114	AM6	E	100	114	Right-handed alpha
Helix 115	AM7	E	114	122	Right-handed alpha
Helix 116	AM8	E	123	141	Right-handed alpha
Helix 117	AM9	E	141	155	Right-handed alpha
Helix 118	AN1	E	158	162	Right-handed 310
Helix 119	AN2	E	167	173	Right-handed alpha
Helix 120	AN3	E	175	187	Right-handed alpha
Helix 121	AN4	E	188	190	Right-handed 310
Helix 122	AN5	E	201	211	Right-handed alpha
Helix 123	AN6	E	258	270	Right-handed alpha
Helix 124	AN7	E	278	282	Right-handed 310
Helix 125	AN8	E	284	291	Right-handed alpha
Helix 126	AN9	E	320	322	Right-handed 310
Helix 127	AO1	E	323	337	Right-handed alpha
Helix 128	AO2	E	343	362	Right-handed alpha
Helix 129	AO3	E	364	379	Right-handed alpha
Helix 130	AO4	E	384	394	Right-handed alpha
Helix 131	AO5	E	396	408	Right-handed alpha
Helix 132	AO6	E	421	424	Right-handed 310
Helix 133	AO7	E	426	433	Right-handed alpha
Helix 134	AO8	L	46	55	Right-handed alpha
Helix 135	AO9	L	63	74	Right-handed alpha
Helix 136	AP1	L	97	110	Right-handed alpha
Helix 137	AP2	L	115	120	Right-handed alpha
Helix 138	AP3	L	123	136	Right-handed alpha
Helix 139	AP4	L	137	151	Right-handed alpha
Helix 140	AP5	L	153	157	Right-handed 310
Helix 141	AP6	L	168	177	Right-handed alpha
Helix 142	AP7	L	181	183	Right-handed 310
Helix 143	AP8	L	193	204	Right-handed alpha
Helix 144	AP9	L	205	209	Right-handed 310
Helix 145	AQ1	L	247	249	Right-handed 310
Helix 146	AQ2	L	250	262	Right-handed alpha
Helix 147	AQ3	L	299	315	Right-handed alpha
Helix 148	AQ4	L	318	337	Right-handed alpha
Helix 149	AQ5	L	370	374	Right-handed 310
Helix 150	AQ6	N	45	49	Right-handed alpha
Helix 151	AQ7	N	67	81	Right-handed alpha
Helix 152	AQ8	N	82	85	Right-handed 310
Helix 153	AQ9	N	92	97	Right-handed alpha
Helix 154	AR1	N	102	113	Right-handed alpha
Helix 155	AR2	N	142	150	Right-handed alpha
Helix 156	AR3	N	168	179	Right-handed alpha
Helix 157	AR4	N	224	241	Right-handed alpha
Helix 158	AR5	N	243	278	Right-handed alpha
Helix 159	AR6	P	4	17	Right-handed alpha
Helix 160	AR7	P	18	36	Right-handed alpha
Helix 161	AR8	P	38	42	Right-handed 310
Helix 162	AR9	P	44	49	Right-handed alpha
Helix 163	AS1	P	53	62	Right-handed alpha
Helix 164	AS2	P	64	85	Right-handed alpha
Helix 165	AS3	P	95	99	Right-handed 310
Helix 166	AS4	P	103	122	Right-handed alpha
Helix 167	AS5	O	32	35	Right-handed 310
Helix 168	AS6	O	40	83	Right-handed alpha
Helix 169	AS7	O	86	94	Right-handed alpha
Helix 170	AS8	Q	64	74	Right-handed alpha
Helix 171	AS9	Q	79	99	Right-handed alpha
Helix 172	AT1	Q	100	104	Right-handed 310
Helix 173	AT2	Q	111	134	Right-handed alpha
Helix 174	AT3	R	19	42	Right-handed alpha
Helix 175	AT4	R	46	55	Right-handed alpha
Helix 176	AT5	C	45	80	Right-handed alpha
Helix 177	AT6	C	82	89	Right-handed alpha
Helix 178	AT7	C	119	128	Right-handed alpha
Helix 179	AT8	C	139	144	Right-handed alpha
Helix 180	AT9	M	45	80	Right-handed alpha
Helix 181	AU1	M	82	89	Right-handed alpha
Helix 182	AU2	M	119	128	Right-handed alpha
Helix 183	AU3	M	139	144	Right-handed alpha

There are 18 sheets in PDB entry 7RJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	23	first strand
Strand 2	K	218	220	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	21	23	first strand
Strand 2	T	218	220	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	192	198	parallel
Strand 4	A	43	49	anti-parallel
Strand 5	A	90	96	anti-parallel
Strand 6	A	80	85	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	310	318	anti-parallel
Strand 4	A	243	251	anti-parallel
Strand 5	A	413	419	anti-parallel
Strand 6	A	231	237	parallel
Strand 7	F	25	30	anti-parallel
Strand 8	D	280	283	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	185	190	parallel
Strand 3	B	29	35	anti-parallel
Strand 4	B	87	93	anti-parallel
Strand 5	B	77	82	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	358	362	parallel
Strand 3	B	238	246	anti-parallel
Strand 4	B	290	298	anti-parallel
Strand 5	B	279	285	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	127	129	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	203	204	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	E	31	36	anti-parallel
Strand 3	E	192	198	parallel
Strand 4	E	43	49	anti-parallel
Strand 5	E	90	96	anti-parallel
Strand 6	E	80	85	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	298	305	anti-parallel
Strand 3	E	310	318	anti-parallel
Strand 4	E	243	251	anti-parallel
Strand 5	E	413	419	anti-parallel
Strand 6	E	231	237	parallel
Strand 7	O	25	30	anti-parallel
Strand 8	N	280	283	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	22	first strand
Strand 2	L	185	190	parallel
Strand 3	L	28	35	anti-parallel
Strand 4	L	87	94	anti-parallel
Strand 5	L	77	82	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	229	232	first strand
Strand 2	L	358	362	parallel
Strand 3	L	238	246	anti-parallel
Strand 4	L	290	298	anti-parallel
Strand 5	L	279	285	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	116	first strand
Strand 2	N	127	129	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	194	195	first strand
Strand 2	N	203	204	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	180	182	anti-parallel
Strand 3	C	188	190	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	208	210	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	174	175	first strand
Strand 2	M	180	182	anti-parallel
Strand 3	M	188	190	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	203	205	first strand
Strand 2	M	208	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RJE