Analysis of interatomic Contacts of Structural Units in PDB entry:
7RKH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RKH entry

There are 2 chains in PDB entry 7RKH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	LEU 571
A	MET 1	SER 83

There are112 helices in PDB entry 7RKH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	15	30	Right-handed alpha
Helix 2	AA2	D	69	79	Right-handed alpha
Helix 3	AA3	D	83	85	Right-handed 310
Helix 4	AA4	D	90	103	Right-handed alpha
Helix 5	AA5	D	115	130	Right-handed alpha
Helix 6	AA6	D	156	170	Right-handed alpha
Helix 7	AA7	D	171	173	Right-handed 310
Helix 8	AA8	D	192	205	Right-handed alpha
Helix 9	AA9	D	221	232	Right-handed alpha
Helix 10	AB1	D	235	237	Right-handed 310
Helix 11	AB2	D	247	249	Right-handed 310
Helix 12	AB3	D	250	258	Right-handed alpha
Helix 13	AB4	D	259	268	Right-handed alpha
Helix 14	AB5	D	269	273	Right-handed 310
Helix 15	AB6	D	276	300	Right-handed alpha
Helix 16	AB7	D	315	318	Right-handed 310
Helix 17	AB8	D	319	333	Right-handed alpha
Helix 18	AB9	D	345	347	Right-handed 310
Helix 19	AC1	D	348	355	Right-handed alpha
Helix 20	AC2	D	355	368	Right-handed alpha
Helix 21	AC3	D	382	397	Right-handed alpha
Helix 22	AC4	D	404	418	Right-handed alpha
Helix 23	AC5	D	469	472	Right-handed 310
Helix 24	AC6	D	473	480	Right-handed alpha
Helix 25	AC7	D	499	504	Right-handed alpha
Helix 26	AC8	D	537	542	Right-handed 310
Helix 27	AC9	D	548	559	Right-handed alpha
Helix 28	AD1	D	561	571	Right-handed alpha
Helix 29	AD2	A	15	30	Right-handed alpha
Helix 30	AD3	A	69	79	Right-handed alpha
Helix 31	AD4	A	83	85	Right-handed 310
Helix 32	AD5	A	90	103	Right-handed alpha
Helix 33	AD6	A	115	130	Right-handed alpha
Helix 34	AD7	A	156	170	Right-handed alpha
Helix 35	AD8	A	171	173	Right-handed 310
Helix 36	AD9	A	192	205	Right-handed alpha
Helix 37	AE1	A	221	232	Right-handed alpha
Helix 38	AE2	A	235	237	Right-handed 310
Helix 39	AE3	A	247	249	Right-handed 310
Helix 40	AE4	A	250	258	Right-handed alpha
Helix 41	AE5	A	259	268	Right-handed alpha
Helix 42	AE6	A	269	273	Right-handed 310
Helix 43	AE7	A	276	300	Right-handed alpha
Helix 44	AE8	A	315	318	Right-handed 310
Helix 45	AE9	A	319	333	Right-handed alpha
Helix 46	AF1	A	345	347	Right-handed 310
Helix 47	AF2	A	348	355	Right-handed alpha
Helix 48	AF3	A	355	368	Right-handed alpha
Helix 49	AF4	A	382	397	Right-handed alpha
Helix 50	AF5	A	404	418	Right-handed alpha
Helix 51	AF6	A	469	472	Right-handed 310
Helix 52	AF7	A	473	480	Right-handed alpha
Helix 53	AF8	A	499	504	Right-handed alpha
Helix 54	AF9	A	537	542	Right-handed 310
Helix 55	AG1	A	548	559	Right-handed alpha
Helix 56	AG2	A	561	571	Right-handed alpha
Helix 57	AG3	B	15	30	Right-handed alpha
Helix 58	AG4	B	69	79	Right-handed alpha
Helix 59	AG5	B	83	85	Right-handed 310
Helix 60	AG6	B	90	103	Right-handed alpha
Helix 61	AG7	B	115	130	Right-handed alpha
Helix 62	AG8	B	156	170	Right-handed alpha
Helix 63	AG9	B	171	173	Right-handed 310
Helix 64	AH1	B	192	205	Right-handed alpha
Helix 65	AH2	B	221	232	Right-handed alpha
Helix 66	AH3	B	235	237	Right-handed 310
Helix 67	AH4	B	247	249	Right-handed 310
Helix 68	AH5	B	250	258	Right-handed alpha
Helix 69	AH6	B	259	268	Right-handed alpha
Helix 70	AH7	B	269	273	Right-handed 310
Helix 71	AH8	B	276	300	Right-handed alpha
Helix 72	AH9	B	315	318	Right-handed 310
Helix 73	AI1	B	319	333	Right-handed alpha
Helix 74	AI2	B	345	347	Right-handed 310
Helix 75	AI3	B	348	355	Right-handed alpha
Helix 76	AI4	B	355	368	Right-handed alpha
Helix 77	AI5	B	382	397	Right-handed alpha
Helix 78	AI6	B	404	418	Right-handed alpha
Helix 79	AI7	B	469	472	Right-handed 310
Helix 80	AI8	B	473	480	Right-handed alpha
Helix 81	AI9	B	499	504	Right-handed alpha
Helix 82	AJ1	B	537	542	Right-handed 310
Helix 83	AJ2	B	548	559	Right-handed alpha
Helix 84	AJ3	B	561	571	Right-handed alpha
Helix 85	AJ4	C	15	30	Right-handed alpha
Helix 86	AJ5	C	69	79	Right-handed alpha
Helix 87	AJ6	C	83	85	Right-handed 310
Helix 88	AJ7	C	90	103	Right-handed alpha
Helix 89	AJ8	C	115	130	Right-handed alpha
Helix 90	AJ9	C	156	170	Right-handed alpha
Helix 91	AK1	C	171	173	Right-handed 310
Helix 92	AK2	C	192	205	Right-handed alpha
Helix 93	AK3	C	221	232	Right-handed alpha
Helix 94	AK4	C	235	237	Right-handed 310
Helix 95	AK5	C	247	249	Right-handed 310
Helix 96	AK6	C	250	258	Right-handed alpha
Helix 97	AK7	C	259	268	Right-handed alpha
Helix 98	AK8	C	269	273	Right-handed 310
Helix 99	AK9	C	276	300	Right-handed alpha
Helix 100	AL1	C	315	318	Right-handed 310
Helix 101	AL2	C	319	333	Right-handed alpha
Helix 102	AL3	C	345	347	Right-handed 310
Helix 103	AL4	C	348	355	Right-handed alpha
Helix 104	AL5	C	355	368	Right-handed alpha
Helix 105	AL6	C	382	397	Right-handed alpha
Helix 106	AL7	C	404	418	Right-handed alpha
Helix 107	AL8	C	469	472	Right-handed 310
Helix 108	AL9	C	473	480	Right-handed alpha
Helix 109	AM1	C	499	504	Right-handed alpha
Helix 110	AM2	C	537	542	Right-handed 310
Helix 111	AM3	C	548	559	Right-handed alpha
Helix 112	AM4	C	561	571	Right-handed alpha

There are 16 sheets in PDB entry 7RKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	34	40	parallel
Strand 3	D	142	147	parallel
Strand 4	D	2	7	parallel
Strand 5	D	175	182	parallel
Strand 6	D	211	215	parallel
Strand 7	D	239	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	189	190	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	343	first strand
Strand 2	D	303	310	parallel
Strand 3	D	371	374	parallel
Strand 4	D	400	403	parallel
Strand 5	D	531	534	parallel
Strand 6	D	520	525	anti-parallel
Strand 7	D	508	513	anti-parallel
Strand 8	D	457	466	anti-parallel
Strand 9	D	484	495	anti-parallel
Strand 10	D	438	443	anti-parallel
Strand 11	D	425	426	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	34	40	parallel
Strand 3	A	142	147	parallel
Strand 4	A	2	7	parallel
Strand 5	A	175	182	parallel
Strand 6	A	211	215	parallel
Strand 7	A	239	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	189	190	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	343	first strand
Strand 2	A	303	310	parallel
Strand 3	A	371	374	parallel
Strand 4	A	400	403	parallel
Strand 5	A	531	534	parallel
Strand 6	A	520	525	anti-parallel
Strand 7	A	508	513	anti-parallel
Strand 8	A	457	466	anti-parallel
Strand 9	A	484	495	anti-parallel
Strand 10	A	438	443	anti-parallel
Strand 11	A	425	426	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	34	40	parallel
Strand 3	B	142	147	parallel
Strand 4	B	2	7	parallel
Strand 5	B	175	182	parallel
Strand 6	B	211	215	parallel
Strand 7	B	239	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	189	190	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	343	first strand
Strand 2	B	303	310	parallel
Strand 3	B	371	374	parallel
Strand 4	B	400	403	parallel
Strand 5	B	531	534	parallel
Strand 6	B	520	525	anti-parallel
Strand 7	B	508	513	anti-parallel
Strand 8	B	457	466	anti-parallel
Strand 9	B	484	495	anti-parallel
Strand 10	B	438	443	anti-parallel
Strand 11	B	425	426	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	34	40	parallel
Strand 3	C	142	147	parallel
Strand 4	C	2	7	parallel
Strand 5	C	175	182	parallel
Strand 6	C	211	215	parallel
Strand 7	C	239	242	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	189	190	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	343	first strand
Strand 2	C	303	310	parallel
Strand 3	C	371	374	parallel
Strand 4	C	400	403	parallel
Strand 5	C	531	534	parallel
Strand 6	C	520	525	anti-parallel
Strand 7	C	508	513	anti-parallel
Strand 8	C	457	466	anti-parallel
Strand 9	C	484	495	anti-parallel
Strand 10	C	438	443	anti-parallel
Strand 11	C	425	426	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RKH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RKH