Analysis of interatomic Contacts of Structural Units in PDB entry:
7RKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RKW entry

There is 1 chain in PDB entry 7RKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 10GLN 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7RKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 31Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
65 70Right-handed alpha
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
85 90Right-handed alpha
Helix 7
AA7
A
93 97Right-handed 310
Helix 8
AA8
A
99 112Right-handed alpha
Helix 9
AA9
A
115 138Right-handed alpha
Helix 10
AB1
A
145 163Right-handed alpha
Helix 11
AB2
A
166 174Right-handed alpha
Helix 12
AB3
A
174 185Right-handed alpha
Helix 13
AB4
A
186 192Right-handed 310
Helix 14
AB5
A
198 226Right-handed alpha
Helix 15
AB6
A
227 231Right-handed 310
Helix 16
AB7
A
237 245Right-handed alpha
Helix 17
AB8
A
254 287Right-handed alpha
Helix 18
AB9
A
287 303Right-handed alpha
Helix 19
AC1
A
309 315Right-handed alpha
Helix 20
AC2
A
316 330Right-handed alpha
Helix 21
AC3
A
360 366Right-handed alpha
Helix 22
AC4
A
379 384Right-handed alpha
Helix 23
AC5
A
386 390Right-handed 310
Helix 24
AC6
A
400 404Right-handed 310
Helix 25
AC7
A
407 425Right-handed alpha
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There are 4 sheets in PDB entry 7RKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
356 359parallel
Strand 4
A
336 340anti-parallel
Strand 5
A
76 77anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
451 456anti-parallel
Strand 3
A
426 430anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
349 351anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
445 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il