Analysis of interatomic Contacts of Structural Units in PDB entry:
7RLM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RLM entry

There are 6 chains in PDB entry 7RLM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 68	LYS 208
A	PRO 67	LYS 208
C	PRO 67	LYS 208
D	SER 68	LYS 208
E	SER 68	LYS 208
F	SER 68	LYS 208

There are 18 helices in PDB entry 7RLM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	96	102	Right-handed alpha
Helix 2	AA2	B	103	105	Right-handed 310
Helix 3	AA3	B	164	166	Right-handed 310
Helix 4	AA4	A	96	101	Right-handed alpha
Helix 5	AA5	A	102	105	Right-handed 310
Helix 6	AA6	A	164	166	Right-handed 310
Helix 7	AA7	C	96	101	Right-handed alpha
Helix 8	AA8	C	102	105	Right-handed 310
Helix 9	AA9	C	164	166	Right-handed 310
Helix 10	AB1	D	96	101	Right-handed alpha
Helix 11	AB2	D	102	105	Right-handed 310
Helix 12	AB3	D	164	166	Right-handed 310
Helix 13	AB4	E	96	102	Right-handed alpha
Helix 14	AB5	E	103	105	Right-handed 310
Helix 15	AB6	E	164	166	Right-handed 310
Helix 16	AB7	F	96	101	Right-handed alpha
Helix 17	AB8	F	102	105	Right-handed 310
Helix 18	AB9	F	164	166	Right-handed 310

There are 18 sheets in PDB entry 7RLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	80	first strand
Strand 2	B	192	207	anti-parallel
Strand 3	B	107	121	anti-parallel
Strand 4	B	157	162	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	80	first strand
Strand 2	B	192	207	anti-parallel
Strand 3	B	107	121	anti-parallel
Strand 4	B	172	173	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	179	185	anti-parallel
Strand 3	B	130	136	anti-parallel
Strand 4	B	149	152	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	80	first strand
Strand 2	A	192	207	anti-parallel
Strand 3	A	107	121	anti-parallel
Strand 4	A	157	162	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	80	first strand
Strand 2	A	192	207	anti-parallel
Strand 3	A	107	121	anti-parallel
Strand 4	A	172	173	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	179	185	anti-parallel
Strand 3	A	130	136	anti-parallel
Strand 4	A	150	152	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	80	first strand
Strand 2	C	192	207	anti-parallel
Strand 3	C	107	121	anti-parallel
Strand 4	C	157	162	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	80	first strand
Strand 2	C	192	207	anti-parallel
Strand 3	C	107	121	anti-parallel
Strand 4	C	172	173	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	179	185	anti-parallel
Strand 3	C	130	136	anti-parallel
Strand 4	C	150	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	80	first strand
Strand 2	D	192	207	anti-parallel
Strand 3	D	107	121	anti-parallel
Strand 4	D	157	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	80	first strand
Strand 2	D	192	207	anti-parallel
Strand 3	D	107	121	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	89	first strand
Strand 2	D	179	185	anti-parallel
Strand 3	D	130	136	anti-parallel
Strand 4	D	150	152	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	80	first strand
Strand 2	E	192	207	anti-parallel
Strand 3	E	107	121	anti-parallel
Strand 4	E	157	162	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	69	80	first strand
Strand 2	E	192	207	anti-parallel
Strand 3	E	107	121	anti-parallel
Strand 4	E	172	173	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	89	first strand
Strand 2	E	179	185	anti-parallel
Strand 3	E	130	136	anti-parallel
Strand 4	E	150	152	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	80	first strand
Strand 2	F	192	207	anti-parallel
Strand 3	F	107	121	anti-parallel
Strand 4	F	157	162	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	69	80	first strand
Strand 2	F	192	207	anti-parallel
Strand 3	F	107	121	anti-parallel
Strand 4	F	172	173	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	89	first strand
Strand 2	F	179	185	anti-parallel
Strand 3	F	130	136	anti-parallel
Strand 4	F	150	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RLM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RLM