Analysis of interatomic Contacts of Structural Units in PDB entry:
7RM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RM9 entry

There are 2 chains in PDB entry 7RM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 333
B
 MET 1SER 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7RM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
46 60Right-handed alpha
Helix 4
AA4
A
73 78Right-handed alpha
Helix 5
AA5
A
97 100Right-handed 310
Helix 6
AA6
A
101 120Right-handed alpha
Helix 7
AA7
A
132 143Right-handed alpha
Helix 8
AA8
A
148 150Right-handed 310
Helix 9
AA9
A
156 172Right-handed alpha
Helix 10
AB1
A
174 176Right-handed 310
Helix 11
AB2
A
209 214Right-handed alpha
Helix 12
AB3
A
215 221Right-handed alpha
Helix 13
AB4
A
221 239Right-handed alpha
Helix 14
AB5
A
242 260Right-handed alpha
Helix 15
AB6
A
306 333Right-handed alpha
Helix 16
AB7
B
14 26Right-handed alpha
Helix 17
AB8
B
43 45Right-handed 310
Helix 18
AB9
B
46 60Right-handed alpha
Helix 19
AC1
B
73 78Right-handed alpha
Helix 20
AC2
B
101 120Right-handed alpha
Helix 21
AC3
B
132 143Right-handed alpha
Helix 22
AC4
B
148 150Right-handed 310
Helix 23
AC5
B
156 172Right-handed alpha
Helix 24
AC6
B
174 176Right-handed 310
Helix 25
AC7
B
209 214Right-handed alpha
Helix 26
AC8
B
215 221Right-handed alpha
Helix 27
AC9
B
221 229Right-handed alpha
Helix 28
AD1
B
229 239Right-handed alpha
Helix 29
AD2
B
242 260Right-handed alpha
Helix 30
AD3
B
306 330Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7RM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 71first strand
Strand 2
A
36 41parallel
Strand 3
A
5 9parallel
Strand 4
A
83 86parallel
Strand 5
A
125 128parallel
Strand 6
A
152 154parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
205 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
192 194anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 272first strand
Strand 2
A
285 293anti-parallel
Strand 3
A
296 299anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 71first strand
Strand 2
B
36 41parallel
Strand 3
B
5 9parallel
Strand 4
B
83 86parallel
Strand 5
B
125 128parallel
Strand 6
B
152 154parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
199 202anti-parallel
Strand 3
B
205 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
192 194anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 272first strand
Strand 2
B
285 293anti-parallel
Strand 3
B
296 299anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il