Analysis of interatomic Contacts of Structural Units in PDB entry:
7RML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RML entry

There are 3 chains in PDB entry 7RML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2HIS 294
B
 TYR 3PRO 292
C
 TYR 3PRO 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 7RML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
33 47Right-handed alpha
Helix 3
AA3
A
48 50Right-handed 310
Helix 4
AA4
A
67 80Right-handed alpha
Helix 5
AA5
A
93 107Right-handed alpha
Helix 6
AA6
A
129 141Right-handed alpha
Helix 7
AA7
A
159 173Right-handed alpha
Helix 8
AA8
A
185 199Right-handed alpha
Helix 9
AA9
A
214 226Right-handed alpha
Helix 10
AB1
A
230 238Right-handed alpha
Helix 11
AB2
A
243 265Right-handed alpha
Helix 12
AB3
A
278 288Right-handed alpha
Helix 13
AB4
B
4 13Right-handed alpha
Helix 14
AB5
B
37 47Right-handed alpha
Helix 15
AB6
B
48 50Right-handed 310
Helix 16
AB7
B
68 79Right-handed alpha
Helix 17
AB8
B
94 107Right-handed alpha
Helix 18
AB9
B
129 141Right-handed alpha
Helix 19
AC1
B
159 173Right-handed alpha
Helix 20
AC2
B
185 200Right-handed alpha
Helix 21
AC3
B
214 224Right-handed alpha
Helix 22
AC4
B
230 238Right-handed alpha
Helix 23
AC5
B
243 265Right-handed alpha
Helix 24
AC6
B
278 288Right-handed alpha
Helix 25
AC7
C
4 13Right-handed alpha
Helix 26
AC8
C
32 47Right-handed alpha
Helix 27
AC9
C
48 50Right-handed 310
Helix 28
AD1
C
68 79Right-handed alpha
Helix 29
AD2
C
129 140Right-handed alpha
Helix 30
AD3
C
159 173Right-handed alpha
Helix 31
AD4
C
185 200Right-handed alpha
Helix 32
AD5
C
214 226Right-handed alpha
Helix 33
AD6
C
230 238Right-handed alpha
Helix 34
AD7
C
243 265Right-handed alpha
Helix 35
AD8
C
278 288Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7RML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
177 180parallel
Strand 3
A
144 149parallel
Strand 4
A
111 115parallel
Strand 5
A
83 88parallel
Strand 6
A
53 56parallel
Strand 7
A
22 27parallel
Strand 8
A
269 273parallel
Strand 9
A
208 209parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
53 56parallel
Strand 3
B
22 27parallel
Strand 4
B
269 273parallel
Strand 5
B
208 209parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
144 149parallel
Strand 3
B
177 180parallel
Strand 4
B
205 206parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 114first strand
Strand 2
C
83 87parallel
Strand 3
C
53 56parallel
Strand 4
C
22 27parallel
Strand 5
C
269 273parallel
Strand 6
C
208 209parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 149first strand
Strand 2
C
175 180parallel
Strand 3
C
205 206parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il