Analysis of interatomic Contacts of Structural Units in PDB entry:
7ROT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ROT entry

There are 2 chains in PDB entry 7ROT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 17THR 372
B
 GLU 15THR 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7ROT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 36Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
74 86Right-handed alpha
Helix 4
AA4
A
96 103Right-handed alpha
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
109 127Right-handed alpha
Helix 7
AA7
A
139 146Right-handed alpha
Helix 8
AA8
A
146 161Right-handed alpha
Helix 9
AA9
A
162 168Right-handed alpha
Helix 10
AB1
A
169 174Right-handed 310
Helix 11
AB2
A
183 199Right-handed alpha
Helix 12
AB3
A
207 209Right-handed 310
Helix 13
AB4
A
210 224Right-handed alpha
Helix 14
AB5
A
262 272Right-handed alpha
Helix 15
AB6
A
283 292Right-handed alpha
Helix 16
AB7
A
292 298Right-handed alpha
Helix 17
AB8
A
305 309Right-handed 310
Helix 18
AB9
A
316 326Right-handed alpha
Helix 19
AC1
A
330 346Right-handed alpha
Helix 20
AC2
A
346 356Right-handed alpha
Helix 21
AC3
A
356 368Right-handed alpha
Helix 22
AC4
B
16 36Right-handed alpha
Helix 23
AC5
B
43 52Right-handed alpha
Helix 24
AC6
B
70 86Right-handed alpha
Helix 25
AC7
B
96 103Right-handed alpha
Helix 26
AC8
B
104 108Right-handed 310
Helix 27
AC9
B
109 125Right-handed alpha
Helix 28
AD1
B
130 132Right-handed 310
Helix 29
AD2
B
139 146Right-handed alpha
Helix 30
AD3
B
146 159Right-handed alpha
Helix 31
AD4
B
162 168Right-handed alpha
Helix 32
AD5
B
169 174Right-handed 310
Helix 33
AD6
B
183 199Right-handed alpha
Helix 34
AD7
B
207 209Right-handed 310
Helix 35
AD8
B
210 224Right-handed alpha
Helix 36
AD9
B
252 256Right-handed 310
Helix 37
AE1
B
262 272Right-handed alpha
Helix 38
AE2
B
283 292Right-handed alpha
Helix 39
AE3
B
292 298Right-handed alpha
Helix 40
AE4
B
316 325Right-handed alpha
Helix 41
AE5
B
330 356Right-handed alpha
Helix 42
AE6
B
356 368Right-handed alpha
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There are 4 sheets in PDB entry 7ROT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
90 95parallel
Strand 3
A
58 63parallel
Strand 4
A
203 204parallel
Strand 5
A
231 232parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
312 314anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
231 234anti-parallel
Strand 3
B
203 204parallel
Strand 4
B
57 63parallel
Strand 5
B
89 95parallel
Strand 6
B
134 138parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 302first strand
Strand 2
B
312 314anti-parallel
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