Analysis of interatomic Contacts of Structural Units in PDB entry:
7RPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RPK entry

There are 2 chains in PDB entry 7RPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 174PHE 1143
H
 LYS 39GLU 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 7RPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
179 187Right-handed alpha
Helix 2
AA2
A
187 209Right-handed alpha
Helix 3
AA3
A
227 242Right-handed alpha
Helix 4
AA4
A
253 268Right-handed alpha
Helix 5
AA5
A
268 273Right-handed alpha
Helix 6
AA6
A
314 329Right-handed alpha
Helix 7
AA7
A
334 339Right-handed alpha
Helix 8
AA8
A
352 361Right-handed alpha
Helix 9
AA9
A
365 369Right-handed 310
Helix 10
AB1
A
370 390Right-handed alpha
Helix 11
AB2
A
397 404Right-handed alpha
Helix 12
AB3
A
414 419Right-handed 310
Helix 13
AB4
A
421 430Right-handed alpha
Helix 14
AB5
A
460 462Right-handed 310
Helix 15
AB6
A
463 471Right-handed alpha
Helix 16
AB7
A
490 502Right-handed alpha
Helix 17
AB8
A
503 522Right-handed alpha
Helix 18
AB9
A
523 548Right-handed alpha
Helix 19
AC1
A
555 559Right-handed 310
Helix 20
AC2
A
560 570Right-handed alpha
Helix 21
AC3
A
572 587Right-handed alpha
Helix 22
AC4
A
591 620Right-handed alpha
Helix 23
AC5
A
621 624Right-handed 310
Helix 24
AC6
A
626 649Right-handed alpha
Helix 25
AC7
A
649 661Right-handed alpha
Helix 26
AC8
A
681 685Right-handed 310
Helix 27
AC9
A
688 706Right-handed alpha
Helix 28
AD1
A
706 715Right-handed alpha
Helix 29
AD2
A
715 736Right-handed alpha
Helix 30
AD3
A
746 750Right-handed 310
Helix 31
AD4
A
757 766Right-handed alpha
Helix 32
AD5
A
770 778Right-handed alpha
Helix 33
AD6
A
818 833Right-handed alpha
Helix 34
AD7
A
849 860Right-handed alpha
Helix 35
AD8
A
865 872Right-handed 310
Helix 36
AD9
A
880 899Right-handed alpha
Helix 37
AE1
A
934 954Right-handed alpha
Helix 38
AE2
A
955 956Right-handed 310
Helix 39
AE3
A
957 961Right-handed 310
Helix 40
AE4
A
969 1001Right-handed alpha
Helix 41
AE5
A
1003 1028Right-handed alpha
Helix 42
AE6
A
1033 1061Right-handed alpha
Helix 43
AE7
A
1065 1094Right-handed alpha
Helix 44
AE8
A
1100 1123Right-handed alpha
Helix 45
AE9
A
1123 1133Right-handed alpha
Helix 46
AF1
H
71 77Right-handed 310
Helix 47
AF2
H
94 96Right-handed 310
Helix 48
AF3
H
100 118Right-handed alpha
Helix 49
AF4
H
139 144Right-handed 310
Helix 50
AF5
H
155 157Right-handed 310
Helix 51
AF6
H
158 170Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7RPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 458first strand
Strand 2
A
299 306anti-parallel
Strand 3
A
481 487anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
909 912first strand
Strand 2
A
918 930anti-parallel
Strand 3
A
782 789anti-parallel
Strand 4
A
964 966anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
78 79first strand
Strand 2
H
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
85 87first strand
Strand 2
H
123 127parallel
Strand 3
H
146 151anti-parallel
Strand 4
H
181 185anti-parallel
Strand 5
H
173 178anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il