Analysis of interatomic Contacts of Structural Units in PDB entry:
7RPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RPO entry

There are 7 chains in PDB entry 7RPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0GLU 251
B
 MET 2ARG 244
C
 MET 1LEU 245
X
 C 5 C 24
Y
 G 1 T 11
Z
 A 13 G 43
E
 SER -1ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7RPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
140 150Right-handed alpha
Helix 4
AA4
A
161 165Right-handed 310
Helix 5
AA5
A
202 211Right-handed alpha
Helix 6
AA6
B
10 20Right-handed alpha
Helix 7
AA7
B
73 81Right-handed alpha
Helix 8
AA8
B
137 145Right-handed alpha
Helix 9
AA9
B
147 151Right-handed 310
Helix 10
AB1
B
199 204Right-handed alpha
Helix 11
AB2
B
205 207Right-handed 310
Helix 12
AB3
C
9 19Right-handed alpha
Helix 13
AB4
C
71 77Right-handed alpha
Helix 14
AB5
C
136 147Right-handed alpha
Helix 15
AB6
C
201 205Right-handed 310
Helix 16
AB7
E
3 12Right-handed alpha
Helix 17
AB8
E
18 33Right-handed alpha
Helix 18
AB9
E
37 47Right-handed alpha
Helix 19
AC1
E
62 75Right-handed alpha
Helix 20
AC2
E
77 88Right-handed alpha
Helix 21
AC3
E
90 97Right-handed alpha
Helix 22
AC4
E
98 100Right-handed 310
Helix 23
AC5
E
120 134Right-handed alpha
Helix 24
AC6
E
138 153Right-handed alpha
Helix 25
AC7
E
160 168Right-handed alpha
Helix 26
AC8
E
176 187Right-handed alpha
Helix 27
AC9
E
190 192Right-handed 310
Helix 28
AD1
E
193 204Right-handed alpha
Helix 29
AD2
E
207 218Right-handed alpha
Helix 30
AD3
E
246 252Right-handed alpha
Helix 31
AD4
E
290 293Right-handed 310
Helix 32
AD5
E
294 299Right-handed alpha
Helix 33
AD6
E
323 328Right-handed alpha
Helix 34
AD7
E
339 343Right-handed 310
Helix 35
AD8
E
366 373Right-handed alpha
Helix 36
AD9
E
392 406Right-handed alpha
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There are 9 sheets in PDB entry 7RPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
97 103anti-parallel
Strand 4
A
110 116anti-parallel
Strand 5
C
172 175anti-parallel
Strand 6
C
162 165anti-parallel
Strand 7
C
152 157anti-parallel
Strand 8
C
193 197anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 52anti-parallel
Strand 5
A
240 245anti-parallel
Strand 6
A
229 234anti-parallel
Strand 7
A
219 223anti-parallel
Strand 8
A
134 138anti-parallel
Strand 9
A
189 191anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
156 160anti-parallel
Strand 4
A
200 201anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
3 6anti-parallel
Strand 3
B
88 93anti-parallel
Strand 4
B
97 103anti-parallel
Strand 5
B
110 113anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
35 40anti-parallel
Strand 4
B
47 52anti-parallel
Strand 5
B
235 240anti-parallel
Strand 6
B
226 231anti-parallel
Strand 7
B
214 218anti-parallel
Strand 8
B
131 136anti-parallel
Strand 9
B
189 190anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
154 159anti-parallel
Strand 3
B
162 168anti-parallel
Strand 4
B
172 178anti-parallel
Strand 5
C
107 112anti-parallel
Strand 6
C
96 101anti-parallel
Strand 7
C
87 90anti-parallel
Strand 8
C
2 5anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 70first strand
Strand 2
C
24 29anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
46 52anti-parallel
Strand 5
C
235 240anti-parallel
Strand 6
C
224 229anti-parallel
Strand 7
C
215 217anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
388 389first strand
Strand 2
E
256 260anti-parallel
Strand 3
E
410 413anti-parallel
Strand 4
E
432 435anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
275 278first strand
Strand 2
E
265 270anti-parallel
Strand 3
E
305 313anti-parallel
Strand 4
E
345 352anti-parallel
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