Analysis of interatomic Contacts of Structural Units in PDB entry:
7RPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RPQ entry

There are 2 chains in PDB entry 7RPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 41GLY 435
B
 LEU 41ARG 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7RPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 60Right-handed alpha
Helix 2
AA2
A
65 82Right-handed alpha
Helix 3
AA3
A
214 230Right-handed alpha
Helix 4
AA4
A
248 258Right-handed alpha
Helix 5
AA5
A
302 314Right-handed alpha
Helix 6
AA6
A
356 361Right-handed alpha
Helix 7
AA7
A
412 416Right-handed 310
Helix 8
AA8
A
417 434Right-handed alpha
Helix 9
AA9
B
43 60Right-handed alpha
Helix 10
AB1
B
65 82Right-handed alpha
Helix 11
AB2
B
214 230Right-handed alpha
Helix 12
AB3
B
248 258Right-handed alpha
Helix 13
AB4
B
302 314Right-handed alpha
Helix 14
AB5
B
356 361Right-handed alpha
Helix 15
AB6
B
417 434Right-handed alpha
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There are 4 sheets in PDB entry 7RPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 200first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
236 240parallel
Strand 4
A
292 296parallel
Strand 5
A
317 321parallel
Strand 6
A
366 367parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
341 350anti-parallel
Strand 4
A
329 335anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 200first strand
Strand 2
B
203 208anti-parallel
Strand 3
B
236 240parallel
Strand 4
B
292 296parallel
Strand 5
B
317 321parallel
Strand 6
B
366 367parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 280first strand
Strand 2
B
264 270anti-parallel
Strand 3
B
342 350anti-parallel
Strand 4
B
329 334anti-parallel
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