Analysis of interatomic Contacts of Structural Units in PDB entry:
7RPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RPW entry

There are 7 chains in PDB entry 7RPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0GLU 251
B
 MET 2ARG 244
C
 MET 1LEU 245
X
 C 5 C 24
Y
 G 1 T 11
Z
 A 13 G 43
E
 SER -1ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7RPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
74 80Right-handed alpha
Helix 3
AA3
A
140 151Right-handed alpha
Helix 4
AA4
A
161 165Right-handed 310
Helix 5
AA5
A
202 210Right-handed alpha
Helix 6
AA6
B
10 20Right-handed alpha
Helix 7
AA7
B
72 81Right-handed alpha
Helix 8
AA8
B
136 147Right-handed alpha
Helix 9
AA9
B
198 204Right-handed alpha
Helix 10
AB1
B
205 207Right-handed 310
Helix 11
AB2
C
9 20Right-handed alpha
Helix 12
AB3
C
70 79Right-handed alpha
Helix 13
AB4
C
135 147Right-handed alpha
Helix 14
AB5
E
2 12Right-handed alpha
Helix 15
AB6
E
18 33Right-handed alpha
Helix 16
AB7
E
37 47Right-handed alpha
Helix 17
AB8
E
51 55Right-handed 310
Helix 18
AB9
E
63 75Right-handed alpha
Helix 19
AC1
E
77 88Right-handed alpha
Helix 20
AC2
E
90 97Right-handed alpha
Helix 21
AC3
E
120 133Right-handed alpha
Helix 22
AC4
E
138 153Right-handed alpha
Helix 23
AC5
E
160 168Right-handed alpha
Helix 24
AC6
E
175 189Right-handed alpha
Helix 25
AC7
E
192 204Right-handed alpha
Helix 26
AC8
E
207 217Right-handed alpha
Helix 27
AC9
E
246 252Right-handed alpha
Helix 28
AD1
E
291 300Right-handed alpha
Helix 29
AD2
E
323 331Right-handed alpha
Helix 30
AD3
E
366 375Right-handed alpha
Helix 31
AD4
E
392 407Right-handed alpha
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There are 15 sheets in PDB entry 7RPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
98 104anti-parallel
Strand 4
A
109 115anti-parallel
Strand 5
C
172 175anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
25 31anti-parallel
Strand 4
A
66 71anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
229 232anti-parallel
Strand 4
A
243 245anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
156 160anti-parallel
Strand 4
A
200 201anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
89 93anti-parallel
Strand 3
B
97 101anti-parallel
Strand 4
B
110 113anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
67 70anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
47 51anti-parallel
Strand 3
B
235 240anti-parallel
Strand 4
B
228 231anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
131 135anti-parallel
Strand 3
B
215 217anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
162 163anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 168first strand
Strand 2
B
172 176anti-parallel
Strand 3
C
107 112anti-parallel
Strand 4
C
96 101anti-parallel
Strand 5
C
87 90anti-parallel
Strand 6
C
3 5anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
33 39anti-parallel
Strand 3
C
46 52anti-parallel
Strand 4
C
235 240anti-parallel
Strand 5
C
224 227anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 131first strand
Strand 2
C
217 218anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 165first strand
Strand 2
C
152 157anti-parallel
Strand 3
C
192 197anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
239 241first strand
Strand 2
E
431 434parallel
Strand 3
E
412 414anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
275 278first strand
Strand 2
E
264 270anti-parallel
Strand 3
E
306 311anti-parallel
Strand 4
E
352 354anti-parallel
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