Analysis of interatomic Contacts of Structural Units in PDB entry:
7RPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RPX entry

There are 6 chains in PDB entry 7RPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 251
B
 MET 1ARG 243
C
 MET 1LYS 243
X
 C 5 T 35
Z
 A 13 G 43
E
 MET 1LYS 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7RPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
142 154Right-handed alpha
Helix 4
AA4
A
202 210Right-handed alpha
Helix 5
AA5
A
211 213Right-handed 310
Helix 6
AA6
B
7 17Right-handed alpha
Helix 7
AA7
B
18 20Right-handed 310
Helix 8
AA8
B
71 78Right-handed alpha
Helix 9
AA9
B
79 81Right-handed 310
Helix 10
AB1
B
136 147Right-handed alpha
Helix 11
AB2
B
198 203Right-handed alpha
Helix 12
AB3
C
9 14Right-handed alpha
Helix 13
AB4
C
15 20Right-handed alpha
Helix 14
AB5
C
70 77Right-handed alpha
Helix 15
AB6
C
135 147Right-handed alpha
Helix 16
AB7
C
199 202Right-handed 310
Helix 17
AB8
C
204 211Right-handed 310
Helix 18
AB9
E
4 9Right-handed alpha
Helix 19
AC1
E
21 30Right-handed alpha
Helix 20
AC2
E
35 42Right-handed alpha
Helix 21
AC3
E
43 47Right-handed 310
Helix 22
AC4
E
63 74Right-handed alpha
Helix 23
AC5
E
77 89Right-handed alpha
Helix 24
AC6
E
94 99Right-handed alpha
Helix 25
AC7
E
120 134Right-handed alpha
Helix 26
AC8
E
139 153Right-handed alpha
Helix 27
AC9
E
161 168Right-handed alpha
Helix 28
AD1
E
175 187Right-handed alpha
Helix 29
AD2
E
190 192Right-handed 310
Helix 30
AD3
E
193 204Right-handed alpha
Helix 31
AD4
E
208 217Right-handed alpha
Helix 32
AD5
E
218 223Right-handed 310
Helix 33
AD6
E
289 297Right-handed alpha
Helix 34
AD7
E
323 328Right-handed alpha
Helix 35
AD8
E
329 332Right-handed 310
Helix 36
AD9
E
335 340Right-handed alpha
Helix 37
AE1
E
392 398Right-handed 310
Helix 38
AE2
E
399 404Right-handed alpha
Helix 39
AE3
E
490 504Right-handed alpha
Helix 40
AE4
E
570 574Right-handed 310
Helix 41
AE5
E
576 587Right-handed alpha
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There are 15 sheets in PDB entry 7RPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
98 103anti-parallel
Strand 4
A
110 115anti-parallel
Strand 5
C
173 175anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
119 120anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
46 53anti-parallel
Strand 4
A
240 245anti-parallel
Strand 5
A
227 234anti-parallel
Strand 6
A
219 224anti-parallel
Strand 7
A
134 138anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
165 170anti-parallel
Strand 4
A
177 180anti-parallel
Strand 5
B
107 109anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
97 102anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
26 29anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
46 51anti-parallel
Strand 5
B
237 240anti-parallel
Strand 6
B
224 229anti-parallel
Strand 7
B
213 217anti-parallel
Strand 8
B
132 135anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
152 157anti-parallel
Strand 3
B
162 167anti-parallel
Strand 4
B
172 175anti-parallel
Strand 5
C
107 112anti-parallel
Strand 6
C
96 101anti-parallel
Strand 7
C
87 90anti-parallel
Strand 8
C
2 5anti-parallel
Strand 9
C
56 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 29first strand
Strand 2
C
33 37anti-parallel
Strand 3
C
45 52anti-parallel
Strand 4
C
236 240anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 165first strand
Strand 2
C
152 157anti-parallel
Strand 3
C
192 197anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
256 257first strand
Strand 2
E
388 389anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
265 266first strand
Strand 2
E
307 313anti-parallel
Strand 3
E
345 352anti-parallel
Strand 4
E
383 384parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 355first strand
Strand 2
E
358 359anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
505 506first strand
Strand 2
E
521 523anti-parallel
Strand 3
E
444 454anti-parallel
Strand 4
E
466 473anti-parallel
Strand 5
E
478 485anti-parallel
Strand 6
E
513 514parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
505 506first strand
Strand 2
E
521 523anti-parallel
Strand 3
E
444 454anti-parallel
Strand 4
E
528 533anti-parallel
Strand 5
E
561 565anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
536 539first strand
Strand 2
E
554 557anti-parallel
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