Analysis of interatomic Contacts of Structural Units in PDB entry:
7RQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RQG entry

There are 4 chains in PDB entry 7RQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1842LYS 1943
B
 ASP 1844LYS 1943
C
 ASP 1844LYS 1943
D
 ASP 1844GLN 1931
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 7RQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1866 1876Right-handed alpha
Helix 2
AA2
A
1882 1889Right-handed alpha
Helix 3
AA3
A
1897 1903Right-handed alpha
Helix 4
AA4
A
1904 1918Right-handed alpha
Helix 5
AA5
B
1861 1865Right-handed 310
Helix 6
AA6
B
1866 1876Right-handed alpha
Helix 7
AA7
B
1882 1889Right-handed alpha
Helix 8
AA8
B
1897 1902Right-handed alpha
Helix 9
AA9
B
1904 1918Right-handed alpha
Helix 10
AB1
C
1861 1865Right-handed 310
Helix 11
AB2
C
1866 1876Right-handed alpha
Helix 12
AB3
C
1882 1889Right-handed alpha
Helix 13
AB4
C
1897 1903Right-handed alpha
Helix 14
AB5
C
1904 1918Right-handed alpha
Helix 15
AB6
D
1861 1865Right-handed 310
Helix 16
AB7
D
1883 1890Right-handed alpha
Helix 17
AB8
D
1897 1903Right-handed alpha
Helix 18
AB9
D
1904 1918Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7RQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1846 1847first strand
Strand 2
A
1922 1925parallel
Strand 3
A
1893 1896parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1855 1857first strand
Strand 2
A
1879 1881parallel
Strand 3
A
1938 1939anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1846 1848first strand
Strand 2
B
1922 1925parallel
Strand 3
B
1893 1896parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1855 1857first strand
Strand 2
B
1879 1881parallel
Strand 3
B
1938 1939anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1846 1847first strand
Strand 2
C
1922 1925parallel
Strand 3
C
1893 1896parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1855 1857first strand
Strand 2
C
1879 1881parallel
Strand 3
C
1938 1939anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1846 1848first strand
Strand 2
D
1922 1925parallel
Strand 3
D
1893 1896parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1855 1858first strand
Strand 2
D
1879 1882parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il