Analysis of interatomic Contacts of Structural Units in PDB entry:
7RT0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RT0 entry

There is 1 chain in PDB entry 7RT0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7RT0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
65 75Right-handed alpha
Helix 3
AA3
A
93 105Right-handed alpha
Helix 4
AA4
A
121 127Right-handed alpha
Helix 5
AA5
A
132 148Right-handed alpha
Helix 6
AA6
A
155 160Right-handed 310
Helix 7
AA7
A
178 189Right-handed alpha
Helix 8
AA8
A
228 233Right-handed alpha
Helix 9
AA9
A
242 250Right-handed alpha
Helix 10
AB1
A
302 310Right-handed alpha
Helix 11
AB2
A
315 326Right-handed alpha
Helix 12
AB3
A
343 345Right-handed 310
Helix 13
AB4
A
360 367Right-handed alpha
Helix 14
AB5
A
378 382Right-handed 310
Helix 15
AB6
A
388 411Right-handed alpha
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There are 6 sheets in PDB entry 7RT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
26 31parallel
Strand 3
A
3 7parallel
Strand 4
A
222 225parallel
Strand 5
A
374 376parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
50 55anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
171 173anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
209 213anti-parallel
Strand 3
A
217 220anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
352 355anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 275first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
295 301anti-parallel
Strand 4
A
257 263anti-parallel
Strand 5
A
338 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il