Analysis of interatomic Contacts of Structural Units in PDB entry:
7RT7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RT7 entry

There are 12 chains in PDB entry 7RT7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1472	ASP 1614
D	MET 1	GLU 144
B	ASP 1472	ASP 1614
C	MET 1	GLU 144
E	ASP 1472	ASP 1614
F	MET 1	GLU 144
G	ASP 1472	ASP 1614
H	MET 1	GLU 144
I	ASP 1472	ASP 1614
J	MET 1	GLU 144
K	ASP 1472	ASP 1614
L	MET 1	GLU 144

There are 63 helices in PDB entry 7RT7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1493	1504	Right-handed alpha
Helix 2	AA2	A	1517	1522	Right-handed alpha
Helix 3	AA3	A	1536	1544	Right-handed alpha
Helix 4	AA4	A	1549	1556	Right-handed alpha
Helix 5	AA5	A	1565	1570	Right-handed alpha
Helix 6	AA6	A	1583	1587	Right-handed 310
Helix 7	AA7	A	1597	1606	Right-handed alpha
Helix 8	AA8	D	7	14	Right-handed alpha
Helix 9	AA9	D	14	27	Right-handed alpha
Helix 10	AB1	D	44	53	Right-handed alpha
Helix 11	AB2	D	103	107	Right-handed 310
Helix 12	AB3	B	1493	1504	Right-handed alpha
Helix 13	AB4	B	1517	1523	Right-handed alpha
Helix 14	AB5	B	1536	1544	Right-handed alpha
Helix 15	AB6	B	1549	1556	Right-handed alpha
Helix 16	AB7	B	1565	1570	Right-handed alpha
Helix 17	AB8	B	1583	1585	Right-handed 310
Helix 18	AB9	B	1597	1606	Right-handed alpha
Helix 19	AC1	C	7	14	Right-handed alpha
Helix 20	AC2	C	14	27	Right-handed alpha
Helix 21	AC3	C	44	53	Right-handed alpha
Helix 22	AC4	C	103	107	Right-handed 310
Helix 23	AC5	E	1493	1504	Right-handed alpha
Helix 24	AC6	E	1517	1522	Right-handed alpha
Helix 25	AC7	E	1536	1544	Right-handed alpha
Helix 26	AC8	E	1549	1556	Right-handed alpha
Helix 27	AC9	E	1565	1570	Right-handed alpha
Helix 28	AD1	E	1583	1585	Right-handed 310
Helix 29	AD2	E	1597	1606	Right-handed alpha
Helix 30	AD3	F	7	14	Right-handed alpha
Helix 31	AD4	F	14	27	Right-handed alpha
Helix 32	AD5	F	44	53	Right-handed alpha
Helix 33	AD6	F	103	107	Right-handed 310
Helix 34	AD7	G	1493	1504	Right-handed alpha
Helix 35	AD8	G	1517	1522	Right-handed alpha
Helix 36	AD9	G	1536	1544	Right-handed alpha
Helix 37	AE1	G	1549	1556	Right-handed alpha
Helix 38	AE2	G	1565	1570	Right-handed alpha
Helix 39	AE3	G	1583	1585	Right-handed 310
Helix 40	AE4	G	1597	1606	Right-handed alpha
Helix 41	AE5	H	7	14	Right-handed alpha
Helix 42	AE6	H	14	27	Right-handed alpha
Helix 43	AE7	H	44	53	Right-handed alpha
Helix 44	AE8	H	103	107	Right-handed 310
Helix 45	AE9	I	1493	1504	Right-handed alpha
Helix 46	AF1	I	1517	1522	Right-handed alpha
Helix 47	AF2	I	1536	1544	Right-handed alpha
Helix 48	AF3	I	1583	1587	Right-handed 310
Helix 49	AF4	I	1597	1606	Right-handed alpha
Helix 50	AF5	J	7	14	Right-handed alpha
Helix 51	AF6	J	14	27	Right-handed alpha
Helix 52	AF7	J	44	53	Right-handed alpha
Helix 53	AF8	J	103	107	Right-handed 310
Helix 54	AF9	K	1493	1504	Right-handed alpha
Helix 55	AG1	K	1517	1522	Right-handed alpha
Helix 56	AG2	K	1536	1544	Right-handed alpha
Helix 57	AG3	K	1565	1570	Right-handed alpha
Helix 58	AG4	K	1583	1587	Right-handed 310
Helix 59	AG5	K	1597	1606	Right-handed alpha
Helix 60	AG6	L	7	14	Right-handed alpha
Helix 61	AG7	L	14	27	Right-handed alpha
Helix 62	AG8	L	44	53	Right-handed alpha
Helix 63	AG9	L	103	107	Right-handed 310

There are 18 sheets in PDB entry 7RT7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1486	1492	first strand
Strand 2	A	1527	1533	anti-parallel
Strand 3	A	1607	1613	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1513	1514	first strand
Strand 2	A	1589	1593	anti-parallel
Strand 3	A	1571	1576	anti-parallel
Strand 4	A	1545	1547	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	6	first strand
Strand 2	D	133	142	anti-parallel
Strand 3	D	112	121	anti-parallel
Strand 4	D	58	69	anti-parallel
Strand 5	D	81	86	anti-parallel
Strand 6	D	91	95	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1479	1480	first strand
Strand 2	B	1486	1492	anti-parallel
Strand 3	B	1527	1533	anti-parallel
Strand 4	B	1607	1613	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1513	1514	first strand
Strand 2	B	1587	1593	anti-parallel
Strand 3	B	1571	1578	anti-parallel
Strand 4	B	1545	1547	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	133	142	anti-parallel
Strand 3	C	112	121	anti-parallel
Strand 4	C	60	69	anti-parallel
Strand 5	C	81	86	anti-parallel
Strand 6	C	91	95	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1479	1480	first strand
Strand 2	E	1486	1492	anti-parallel
Strand 3	E	1527	1533	anti-parallel
Strand 4	E	1607	1612	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1513	1514	first strand
Strand 2	E	1587	1593	anti-parallel
Strand 3	E	1571	1578	anti-parallel
Strand 4	E	1545	1547	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	133	142	anti-parallel
Strand 3	F	112	121	anti-parallel
Strand 4	F	58	69	anti-parallel
Strand 5	F	81	86	anti-parallel
Strand 6	F	91	95	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1486	1492	first strand
Strand 2	G	1527	1533	anti-parallel
Strand 3	G	1607	1612	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1513	1514	first strand
Strand 2	G	1587	1593	anti-parallel
Strand 3	G	1571	1578	anti-parallel
Strand 4	G	1545	1547	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	133	142	anti-parallel
Strand 3	H	112	121	anti-parallel
Strand 4	H	58	69	anti-parallel
Strand 5	H	81	86	anti-parallel
Strand 6	H	91	95	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1486	1492	first strand
Strand 2	I	1527	1533	anti-parallel
Strand 3	I	1607	1612	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1513	1514	first strand
Strand 2	I	1589	1593	anti-parallel
Strand 3	I	1571	1576	anti-parallel
Strand 4	I	1545	1548	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	6	first strand
Strand 2	J	133	142	anti-parallel
Strand 3	J	112	121	anti-parallel
Strand 4	J	58	69	anti-parallel
Strand 5	J	81	86	anti-parallel
Strand 6	J	91	95	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1486	1492	first strand
Strand 2	K	1527	1533	anti-parallel
Strand 3	K	1607	1613	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1513	1514	first strand
Strand 2	K	1589	1593	anti-parallel
Strand 3	K	1571	1576	anti-parallel
Strand 4	K	1545	1547	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	6	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	112	121	anti-parallel
Strand 4	L	58	69	anti-parallel
Strand 5	L	81	86	anti-parallel
Strand 6	L	91	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RT7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RT7