Analysis of interatomic Contacts of Structural Units in PDB entry:
7RTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RTM entry

There are 2 chains in PDB entry 7RTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 451LYS 1021
B
 LEU 451LYS 1021
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 7RTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
455 461Right-handed alpha
Helix 2
AA2
A
467 472Right-handed alpha
Helix 3
AA3
A
478 491Right-handed alpha
Helix 4
AA4
A
494 504Right-handed alpha
Helix 5
AA5
A
509 528Right-handed alpha
Helix 6
AA6
A
538 552Right-handed alpha
Helix 7
AA7
A
558 581Right-handed alpha
Helix 8
AA8
A
583 589Right-handed 310
Helix 9
AA9
A
590 620Right-handed alpha
Helix 10
AB1
A
627 634Right-handed 310
Helix 11
AB2
A
645 655Right-handed alpha
Helix 12
AB3
A
659 663Right-handed 310
Helix 13
AB4
A
668 675Right-handed alpha
Helix 14
AB5
A
693 714Right-handed alpha
Helix 15
AB6
A
715 718Right-handed 310
Helix 16
AB7
A
722 732Right-handed alpha
Helix 17
AB8
A
732 748Right-handed alpha
Helix 18
AB9
A
779 786Right-handed alpha
Helix 19
AC1
A
786 809Right-handed alpha
Helix 20
AC2
A
820 838Right-handed alpha
Helix 21
AC3
A
846 857Right-handed alpha
Helix 22
AC4
A
880 892Right-handed alpha
Helix 23
AC5
A
903 919Right-handed alpha
Helix 24
AC6
A
922 929Right-handed alpha
Helix 25
AC7
A
942 947Right-handed alpha
Helix 26
AC8
A
948 971Right-handed alpha
Helix 27
AC9
A
980 996Right-handed alpha
Helix 28
AD1
A
998 1002Right-handed 310
Helix 29
AD2
A
1009 1019Right-handed alpha
Helix 30
AD3
B
455 463Right-handed alpha
Helix 31
AD4
B
463 469Right-handed alpha
Helix 32
AD5
B
477 504Right-handed alpha
Helix 33
AD6
B
509 528Right-handed alpha
Helix 34
AD7
B
538 552Right-handed alpha
Helix 35
AD8
B
558 581Right-handed alpha
Helix 36
AD9
B
585 589Right-handed 310
Helix 37
AE1
B
590 620Right-handed alpha
Helix 38
AE2
B
627 634Right-handed 310
Helix 39
AE3
B
645 655Right-handed alpha
Helix 40
AE4
B
660 664Right-handed 310
Helix 41
AE5
B
668 673Right-handed alpha
Helix 42
AE6
B
693 714Right-handed alpha
Helix 43
AE7
B
715 718Right-handed 310
Helix 44
AE8
B
722 727Right-handed alpha
Helix 45
AE9
B
732 748Right-handed alpha
Helix 46
AF1
B
763 767Right-handed 310
Helix 47
AF2
B
779 786Right-handed alpha
Helix 48
AF3
B
786 809Right-handed alpha
Helix 49
AF4
B
820 838Right-handed alpha
Helix 50
AF5
B
846 857Right-handed alpha
Helix 51
AF6
B
880 891Right-handed alpha
Helix 52
AF7
B
892 894Right-handed 310
Helix 53
AF8
B
896 901Right-handed alpha
Helix 54
AF9
B
903 919Right-handed alpha
Helix 55
AG1
B
922 929Right-handed alpha
Helix 56
AG2
B
941 945Right-handed 310
Helix 57
AG3
B
948 972Right-handed alpha
Helix 58
AG4
B
977 996Right-handed alpha
Helix 59
AG5
B
997 1001Right-handed 310
Helix 60
AG6
B
1009 1019Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7RTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 536first strand
Strand 2
A
844 845anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 639first strand
Strand 2
A
678 681anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
636 639first strand
Strand 2
B
678 681anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il