Analysis of interatomic Contacts of Structural Units in PDB entry:
7RTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RTO entry

There are 3 chains in PDB entry 7RTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 61GLY 514
B
 THR 61GLY 514
C
 THR 61GLY 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7RTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 80Right-handed alpha
Helix 2
AA2
A
89 135Right-handed alpha
Helix 3
AA3
A
321 340Right-handed alpha
Helix 4
AA4
A
346 353Right-handed alpha
Helix 5
AA5
A
424 438Right-handed alpha
Helix 6
AA6
A
445 455Right-handed alpha
Helix 7
AA7
A
469 483Right-handed alpha
Helix 8
AA8
A
483 491Right-handed alpha
Helix 9
AA9
A
494 509Right-handed alpha
Helix 10
AB1
B
65 79Right-handed alpha
Helix 11
AB2
B
89 115Right-handed alpha
Helix 12
AB3
B
117 135Right-handed alpha
Helix 13
AB4
B
147 177Right-handed alpha
Helix 14
AB5
B
184 204Right-handed alpha
Helix 15
AB6
B
249 256Right-handed alpha
Helix 16
AB7
B
257 263Right-handed alpha
Helix 17
AB8
B
296 330Right-handed alpha
Helix 18
AB9
B
424 438Right-handed alpha
Helix 19
AC1
B
445 454Right-handed alpha
Helix 20
AC2
B
469 482Right-handed alpha
Helix 21
AC3
B
483 491Right-handed alpha
Helix 22
AC4
B
494 509Right-handed alpha
Helix 23
AC5
B
510 513Right-handed 310
Helix 24
AC6
C
65 79Right-handed alpha
Helix 25
AC7
C
89 135Right-handed alpha
Helix 26
AC8
C
321 340Right-handed alpha
Helix 27
AC9
C
341 343Right-handed 310
Helix 28
AD1
C
346 351Right-handed alpha
Helix 29
AD2
C
424 438Right-handed alpha
Helix 30
AD3
C
445 454Right-handed alpha
Helix 31
AD4
C
469 483Right-handed alpha
Helix 32
AD5
C
484 491Right-handed alpha
Helix 33
AD6
C
494 509Right-handed alpha
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There are 6 sheets in PDB entry 7RTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 406first strand
Strand 2
A
390 396anti-parallel
Strand 3
A
376 382anti-parallel
Strand 4
A
363 368anti-parallel
Strand 5
A
459 464anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 414first strand
Strand 2
A
417 421anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 408first strand
Strand 2
B
389 396anti-parallel
Strand 3
B
377 382anti-parallel
Strand 4
B
363 368anti-parallel
Strand 5
B
459 465anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 414first strand
Strand 2
B
417 419anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
401 406first strand
Strand 2
C
390 396anti-parallel
Strand 3
C
376 382anti-parallel
Strand 4
C
363 368anti-parallel
Strand 5
C
459 464anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
410 414first strand
Strand 2
C
417 421anti-parallel
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