Analysis of interatomic Contacts of Structural Units in PDB entry:
7RUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RUA entry

There are 8 chains in PDB entry 7RUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 16PRO 339
B
 GLU 16PRO 339
C
 ARG 18PRO 288
D
 GLU 1008PRO 1114
E
 PRO 93SER 140
F
 ARG 18PRO 288
G
 GLU 1008PRO 1109
H
 PRO 93SER 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 7RUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 28Right-handed alpha
Helix 2
AA2
A
43 57Right-handed alpha
Helix 3
AA3
A
72 78Right-handed alpha
Helix 4
AA4
A
116 133Right-handed alpha
Helix 5
AA5
A
135 152Right-handed alpha
Helix 6
AA6
A
163 187Right-handed alpha
Helix 7
AA7
A
211 232Right-handed alpha
Helix 8
AA8
A
245 263Right-handed alpha
Helix 9
AA9
A
283 304Right-handed alpha
Helix 10
AB1
A
321 334Right-handed alpha
Helix 11
AB2
B
22 28Right-handed alpha
Helix 12
AB3
B
43 57Right-handed alpha
Helix 13
AB4
B
72 78Right-handed alpha
Helix 14
AB5
B
116 133Right-handed alpha
Helix 15
AB6
B
135 152Right-handed alpha
Helix 16
AB7
B
163 187Right-handed alpha
Helix 17
AB8
B
211 232Right-handed alpha
Helix 18
AB9
B
245 263Right-handed alpha
Helix 19
AC1
B
283 304Right-handed alpha
Helix 20
AC2
B
321 334Right-handed alpha
Helix 21
AC3
C
20 37Right-handed alpha
Helix 22
AC4
C
38 56Right-handed alpha
Helix 23
AC5
C
58 76Right-handed alpha
Helix 24
AC6
C
78 97Right-handed alpha
Helix 25
AC7
C
101 115Right-handed alpha
Helix 26
AC8
C
119 133Right-handed alpha
Helix 27
AC9
C
142 157Right-handed alpha
Helix 28
AD1
C
158 169Right-handed alpha
Helix 29
AD2
C
172 186Right-handed alpha
Helix 30
AD3
C
191 206Right-handed alpha
Helix 31
AD4
C
208 223Right-handed alpha
Helix 32
AD5
C
234 250Right-handed alpha
Helix 33
AD6
C
251 262Right-handed alpha
Helix 34
AD7
C
262 267Right-handed alpha
Helix 35
AD8
C
268 270Right-handed 310
Helix 36
AD9
C
271 284Right-handed alpha
Helix 37
AE1
D
1009 1014Right-handed alpha
Helix 38
AE2
D
1015 1017Right-handed 310
Helix 39
AE3
D
1018 1032Right-handed alpha
Helix 40
AE4
D
1039 1044Right-handed alpha
Helix 41
AE5
D
1062 1075Right-handed alpha
Helix 42
AE6
D
1081 1088Right-handed alpha
Helix 43
AE7
D
1092 1113Right-handed alpha
Helix 44
AE8
E
94 104Right-handed alpha
Helix 45
AE9
E
108 129Right-handed alpha
Helix 46
AF1
E
131 140Right-handed alpha
Helix 47
AF2
F
20 37Right-handed alpha
Helix 48
AF3
F
38 56Right-handed alpha
Helix 49
AF4
F
58 76Right-handed alpha
Helix 50
AF5
F
78 97Right-handed alpha
Helix 51
AF6
F
101 115Right-handed alpha
Helix 52
AF7
F
119 133Right-handed alpha
Helix 53
AF8
F
142 157Right-handed alpha
Helix 54
AF9
F
158 169Right-handed alpha
Helix 55
AG1
F
172 186Right-handed alpha
Helix 56
AG2
F
191 206Right-handed alpha
Helix 57
AG3
F
208 223Right-handed alpha
Helix 58
AG4
F
234 250Right-handed alpha
Helix 59
AG5
F
251 262Right-handed alpha
Helix 60
AG6
F
262 267Right-handed alpha
Helix 61
AG7
F
268 270Right-handed 310
Helix 62
AG8
F
271 284Right-handed alpha
Helix 63
AG9
G
1009 1014Right-handed alpha
Helix 64
AH1
G
1015 1017Right-handed 310
Helix 65
AH2
G
1018 1032Right-handed alpha
Helix 66
AH3
G
1039 1044Right-handed alpha
Helix 67
AH4
G
1057 1070Right-handed alpha
Helix 68
AH5
G
1076 1083Right-handed alpha
Helix 69
AH6
G
1087 1108Right-handed alpha
Helix 70
AH7
H
94 104Right-handed alpha
Helix 71
AH8
H
108 129Right-handed alpha
Helix 72
AH9
H
131 140Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7RUA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
62 66parallel
Strand 4
A
156 160parallel
Strand 5
A
33 38parallel
Strand 6
A
236 243parallel
Strand 7
A
268 274parallel
Strand 8
A
308 313parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
94 98anti-parallel
Strand 3
B
62 66parallel
Strand 4
B
156 160parallel
Strand 5
B
33 38parallel
Strand 6
B
236 243parallel
Strand 7
B
268 274parallel
Strand 8
B
308 313parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il