Analysis of interatomic Contacts of Structural Units in PDB entry:
7RUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RUD entry

There are 4 chains in PDB entry 7RUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5GLY 350
B
 ASP 7ARG 349
C
 ASN 5GLY 350
D
 ASN 5ARG 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7RUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
29 48Right-handed alpha
Helix 3
AA3
A
65 84Right-handed alpha
Helix 4
AA4
A
118 136Right-handed alpha
Helix 5
AA5
A
149 154Right-handed alpha
Helix 6
AA6
A
155 157Right-handed 310
Helix 7
AA7
A
163 167Right-handed 310
Helix 8
AA8
A
169 177Right-handed alpha
Helix 9
AA9
A
193 205Right-handed alpha
Helix 10
AB1
A
242 256Right-handed alpha
Helix 11
AB2
A
276 292Right-handed alpha
Helix 12
AB3
A
330 350Right-handed alpha
Helix 13
AB4
B
18 26Right-handed alpha
Helix 14
AB5
B
29 48Right-handed alpha
Helix 15
AB6
B
65 84Right-handed alpha
Helix 16
AB7
B
118 136Right-handed alpha
Helix 17
AB8
B
148 157Right-handed 310
Helix 18
AB9
B
169 177Right-handed alpha
Helix 19
AC1
B
193 205Right-handed alpha
Helix 20
AC2
B
242 257Right-handed alpha
Helix 21
AC3
B
267 272Right-handed alpha
Helix 22
AC4
B
274 276Right-handed 310
Helix 23
AC5
B
277 291Right-handed alpha
Helix 24
AC6
B
330 348Right-handed alpha
Helix 25
AC7
C
18 26Right-handed alpha
Helix 26
AC8
C
29 48Right-handed alpha
Helix 27
AC9
C
65 83Right-handed alpha
Helix 28
AD1
C
118 136Right-handed alpha
Helix 29
AD2
C
149 154Right-handed alpha
Helix 30
AD3
C
163 167Right-handed 310
Helix 31
AD4
C
169 177Right-handed alpha
Helix 32
AD5
C
193 204Right-handed alpha
Helix 33
AD6
C
242 256Right-handed alpha
Helix 34
AD7
C
267 271Right-handed 310
Helix 35
AD8
C
276 291Right-handed alpha
Helix 36
AD9
C
330 347Right-handed alpha
Helix 37
AE1
D
18 26Right-handed alpha
Helix 38
AE2
D
29 48Right-handed alpha
Helix 39
AE3
D
65 83Right-handed alpha
Helix 40
AE4
D
118 136Right-handed alpha
Helix 41
AE5
D
148 155Right-handed 310
Helix 42
AE6
D
163 167Right-handed 310
Helix 43
AE7
D
169 178Right-handed alpha
Helix 44
AE8
D
193 204Right-handed alpha
Helix 45
AE9
D
243 256Right-handed alpha
Helix 46
AF1
D
267 271Right-handed 310
Helix 47
AF2
D
276 292Right-handed alpha
Helix 48
AF3
D
330 348Right-handed alpha
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There are 9 sheets in PDB entry 7RUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
B
218 223anti-parallel
Strand 3
B
208 212anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
87 92parallel
Strand 3
A
140 143parallel
Strand 4
A
159 162parallel
Strand 5
A
183 186parallel
Strand 6
A
229 233parallel
Strand 7
A
262 265parallel
Strand 8
A
296 302parallel
Strand 9
A
54 59parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
218 223anti-parallel
Strand 3
B
10 15anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
322 323parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
87 92parallel
Strand 3
B
140 143parallel
Strand 4
B
159 162parallel
Strand 5
B
183 186parallel
Strand 6
B
229 233parallel
Strand 7
B
262 265parallel
Strand 8
B
296 302parallel
Strand 9
B
54 59parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 14first strand
Strand 2
D
218 223anti-parallel
Strand 3
D
208 212anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 59first strand
Strand 2
C
87 92parallel
Strand 3
C
140 143parallel
Strand 4
C
157 162parallel
Strand 5
C
183 186parallel
Strand 6
C
229 233parallel
Strand 7
C
262 265parallel
Strand 8
C
296 302parallel
Strand 9
C
54 59parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 212first strand
Strand 2
C
218 223anti-parallel
Strand 3
D
10 15anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 59first strand
Strand 2
D
87 92parallel
Strand 3
D
140 143parallel
Strand 4
D
157 162parallel
Strand 5
D
183 186parallel
Strand 6
D
229 233parallel
Strand 7
D
262 265parallel
Strand 8
D
296 302parallel
Strand 9
D
54 59parallel
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