Analysis of interatomic Contacts of Structural Units in PDB entry:
7RUG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RUG entry

There are 2 chains in PDB entry 7RUG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34VAL 466
L
 PHE 102ARG 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7RUG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 57Right-handed alpha
Helix 2
AA2
A
58 67Right-handed alpha
Helix 3
AA3
A
94 116Right-handed alpha
Helix 4
AA4
A
124 132Right-handed alpha
Helix 5
AA5
A
133 150Right-handed alpha
Helix 6
AA6
A
154 197Right-handed alpha
Helix 7
AA7
A
198 229Right-handed alpha
Helix 8
AA8
A
234 255Right-handed alpha
Helix 9
AA9
A
257 264Right-handed alpha
Helix 10
AB1
A
268 289Right-handed alpha
Helix 11
AB2
A
335 353Right-handed alpha
Helix 12
AB3
A
404 424Right-handed alpha
Helix 13
AB4
A
440 463Right-handed alpha
Helix 14
AB5
A
464 466Right-handed 310
Helix 15
AB6
L
113 117Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 7RUG.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
105 106first strand
Strand 2
L
111 112anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il