Analysis of interatomic Contacts of Structural Units in PDB entry:
7RUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RUM entry

There are 2 chains in PDB entry 7RUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2CYS 264
B
 LEU 4CYS 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 7RUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
34 49Right-handed alpha
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
76 88Right-handed alpha
Helix 5
AA5
A
90 102Right-handed alpha
Helix 6
AA6
A
118 130Right-handed alpha
Helix 7
AA7
A
131 142Right-handed alpha
Helix 8
AA8
A
157 170Right-handed alpha
Helix 9
AA9
A
170 177Right-handed alpha
Helix 10
AB1
A
188 191Right-handed 310
Helix 11
AB2
A
197 206Right-handed alpha
Helix 12
AB3
A
208 223Right-handed alpha
Helix 13
AB4
A
223 232Right-handed alpha
Helix 14
AB5
A
234 244Right-handed alpha
Helix 15
AB6
A
245 248Right-handed 310
Helix 16
AB7
A
251 263Right-handed alpha
Helix 17
AB8
B
13 23Right-handed alpha
Helix 18
AB9
B
34 49Right-handed alpha
Helix 19
AC1
B
57 65Right-handed alpha
Helix 20
AC2
B
66 69Right-handed 310
Helix 21
AC3
B
76 88Right-handed alpha
Helix 22
AC4
B
90 102Right-handed alpha
Helix 23
AC5
B
118 142Right-handed alpha
Helix 24
AC6
B
155 170Right-handed alpha
Helix 25
AC7
B
170 177Right-handed alpha
Helix 26
AC8
B
188 191Right-handed 310
Helix 27
AC9
B
197 206Right-handed alpha
Helix 28
AD1
B
208 223Right-handed alpha
Helix 29
AD2
B
223 232Right-handed alpha
Helix 30
AD3
B
234 244Right-handed alpha
Helix 31
AD4
B
245 248Right-handed 310
Helix 32
AD5
B
251 263Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7RUM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
178 180anti-parallel
Strand 3
A
185 186anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
178 180anti-parallel
Strand 3
B
185 186anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il