Analysis of interatomic Contacts of Structural Units in PDB entry:
7RUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RUN entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 7RUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 705LYS 808
A
 GLY 810SER 904
A
 VAL 906ARG 908
A
 GLN 910ILE 927
A
 THR 929ARG 1012
B
 VAL 706LYS 808
B
 GLY 810SER 904
B
 VAL 906ARG 908
B
 GLN 910ILE 927
B
 THR 929ARG 1012
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7RUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
720 722Right-handed 310
Helix 2
AA2
A
765 782Right-handed alpha
Helix 3
AA3
A
812 822Right-handed alpha
Helix 4
AA4
A
847 868Right-handed alpha
Helix 5
AA5
A
892 896Right-handed 310
Helix 6
AA6
A
914 918Right-handed 310
Helix 7
AA7
A
919 926Right-handed alpha
Helix 8
AA8
A
929 946Right-handed alpha
Helix 9
AA9
A
956 967Right-handed alpha
Helix 10
AB1
A
977 988Right-handed alpha
Helix 11
AB2
A
997 1012Right-handed alpha
Helix 12
AB3
B
720 722Right-handed 310
Helix 13
AB4
B
765 782Right-handed alpha
Helix 14
AB5
B
812 823Right-handed alpha
Helix 15
AB6
B
847 868Right-handed alpha
Helix 16
AB7
B
892 896Right-handed 310
Helix 17
AB8
B
914 918Right-handed 310
Helix 18
AB9
B
919 926Right-handed alpha
Helix 19
AC1
B
929 946Right-handed alpha
Helix 20
AC2
B
956 967Right-handed alpha
Helix 21
AC3
B
977 988Right-handed alpha
Helix 22
AC4
B
997 1012Right-handed alpha
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There are 6 sheets in PDB entry 7RUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 732first strand
Strand 2
A
737 744anti-parallel
Strand 3
A
752 759anti-parallel
Strand 4
A
801 805anti-parallel
Strand 5
A
790 794anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 811first strand
Strand 2
A
880 882anti-parallel
Strand 3
A
888 890anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 871first strand
Strand 2
A
897 898anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 733first strand
Strand 2
B
736 744anti-parallel
Strand 3
B
752 759anti-parallel
Strand 4
B
801 805anti-parallel
Strand 5
B
790 794anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
810 811first strand
Strand 2
B
880 882anti-parallel
Strand 3
B
888 890anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
870 871first strand
Strand 2
B
897 898anti-parallel
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