Analysis of interatomic Contacts of Structural Units in PDB entry:
7RY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RY0 entry

There are 2 chains in PDB entry 7RY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 294ASP 699
B
 THR 293GLU 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7RY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
295 299Right-handed 310
Helix 2
AA2
A
305 317Right-handed alpha
Helix 3
AA3
A
374 378Right-handed 310
Helix 4
AA4
A
379 383Right-handed 310
Helix 5
AA5
A
406 429Right-handed alpha
Helix 6
AA6
A
430 452Right-handed alpha
Helix 7
AA7
A
455 461Right-handed alpha
Helix 8
AA8
A
476 483Right-handed alpha
Helix 9
AA9
A
498 504Right-handed alpha
Helix 10
AB1
A
505 507Right-handed 310
Helix 11
AB2
A
508 514Right-handed alpha
Helix 12
AB3
A
523 530Right-handed alpha
Helix 13
AB4
A
554 580Right-handed alpha
Helix 14
AB5
A
607 614Right-handed alpha
Helix 15
AB6
A
640 653Right-handed alpha
Helix 16
AB7
A
656 674Right-handed alpha
Helix 17
AB8
A
680 697Right-handed alpha
Helix 18
AB9
B
295 299Right-handed 310
Helix 19
AC1
B
300 304Right-handed 310
Helix 20
AC2
B
305 318Right-handed alpha
Helix 21
AC3
B
374 378Right-handed 310
Helix 22
AC4
B
379 383Right-handed 310
Helix 23
AC5
B
399 405Right-handed alpha
Helix 24
AC6
B
406 429Right-handed alpha
Helix 25
AC7
B
430 452Right-handed alpha
Helix 26
AC8
B
455 461Right-handed alpha
Helix 27
AC9
B
476 483Right-handed alpha
Helix 28
AD1
B
498 504Right-handed alpha
Helix 29
AD2
B
505 507Right-handed 310
Helix 30
AD3
B
508 514Right-handed alpha
Helix 31
AD4
B
523 531Right-handed alpha
Helix 32
AD5
B
554 580Right-handed alpha
Helix 33
AD6
B
581 583Right-handed 310
Helix 34
AD7
B
607 614Right-handed alpha
Helix 35
AD8
B
640 653Right-handed alpha
Helix 36
AD9
B
656 674Right-handed alpha
Helix 37
AE1
B
680 697Right-handed alpha
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There are 6 sheets in PDB entry 7RY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 331first strand
Strand 2
A
337 343anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
361 365parallel
Strand 5
A
368 371anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
490 495parallel
Strand 4
A
539 543parallel
Strand 5
A
535 536anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 588first strand
Strand 2
A
632 636parallel
Strand 3
A
597 601anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 331first strand
Strand 2
B
337 343anti-parallel
Strand 3
B
386 391anti-parallel
Strand 4
B
361 365parallel
Strand 5
B
368 371anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 467first strand
Strand 2
B
518 521anti-parallel
Strand 3
B
490 495parallel
Strand 4
B
539 543parallel
Strand 5
B
535 536anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
585 588first strand
Strand 2
B
632 636parallel
Strand 3
B
597 601anti-parallel
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