Analysis of interatomic Contacts of Structural Units in PDB entry:
7RY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RY1 entry

There are 3 chains in PDB entry 7RY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 293ASP 699
B
 THR 293ILE 698
C
 THR 293ILE 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 7RY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
300 304Right-handed 310
Helix 2
AA2
A
305 318Right-handed alpha
Helix 3
AA3
A
350 354Right-handed 310
Helix 4
AA4
A
374 378Right-handed 310
Helix 5
AA5
A
379 383Right-handed 310
Helix 6
AA6
A
403 428Right-handed alpha
Helix 7
AA7
A
430 452Right-handed alpha
Helix 8
AA8
A
455 461Right-handed alpha
Helix 9
AA9
A
476 483Right-handed alpha
Helix 10
AB1
A
498 504Right-handed alpha
Helix 11
AB2
A
508 513Right-handed alpha
Helix 12
AB3
A
523 533Right-handed alpha
Helix 13
AB4
A
556 568Right-handed alpha
Helix 14
AB5
A
568 579Right-handed alpha
Helix 15
AB6
A
607 618Right-handed alpha
Helix 16
AB7
A
640 653Right-handed alpha
Helix 17
AB8
A
656 675Right-handed alpha
Helix 18
AB9
A
680 696Right-handed alpha
Helix 19
AC1
B
305 318Right-handed alpha
Helix 20
AC2
B
374 378Right-handed 310
Helix 21
AC3
B
379 383Right-handed 310
Helix 22
AC4
B
403 428Right-handed alpha
Helix 23
AC5
B
430 452Right-handed alpha
Helix 24
AC6
B
455 461Right-handed alpha
Helix 25
AC7
B
476 483Right-handed alpha
Helix 26
AC8
B
498 504Right-handed alpha
Helix 27
AC9
B
508 513Right-handed alpha
Helix 28
AD1
B
524 533Right-handed alpha
Helix 29
AD2
B
557 568Right-handed alpha
Helix 30
AD3
B
568 579Right-handed alpha
Helix 31
AD4
B
607 622Right-handed alpha
Helix 32
AD5
B
640 653Right-handed alpha
Helix 33
AD6
B
656 674Right-handed alpha
Helix 34
AD7
B
680 696Right-handed alpha
Helix 35
AD8
C
295 299Right-handed 310
Helix 36
AD9
C
305 318Right-handed alpha
Helix 37
AE1
C
374 378Right-handed 310
Helix 38
AE2
C
379 383Right-handed 310
Helix 39
AE3
C
403 428Right-handed alpha
Helix 40
AE4
C
430 452Right-handed alpha
Helix 41
AE5
C
455 461Right-handed alpha
Helix 42
AE6
C
477 483Right-handed alpha
Helix 43
AE7
C
498 504Right-handed alpha
Helix 44
AE8
C
505 507Right-handed 310
Helix 45
AE9
C
508 513Right-handed alpha
Helix 46
AF1
C
523 533Right-handed alpha
Helix 47
AF2
C
557 568Right-handed alpha
Helix 48
AF3
C
568 580Right-handed alpha
Helix 49
AF4
C
581 583Right-handed 310
Helix 50
AF5
C
607 619Right-handed alpha
Helix 51
AF6
C
640 653Right-handed alpha
Helix 52
AF7
C
656 674Right-handed alpha
Helix 53
AF8
C
680 697Right-handed alpha
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There are 9 sheets in PDB entry 7RY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 331first strand
Strand 2
A
337 343anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
360 365parallel
Strand 5
A
368 371anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
490 495parallel
Strand 4
A
539 543parallel
Strand 5
A
535 536anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 588first strand
Strand 2
A
632 636parallel
Strand 3
A
597 601anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 331first strand
Strand 2
B
337 343anti-parallel
Strand 3
B
386 391anti-parallel
Strand 4
B
360 365parallel
Strand 5
B
368 371anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 467first strand
Strand 2
B
519 521anti-parallel
Strand 3
B
490 495parallel
Strand 4
B
539 543parallel
Strand 5
B
535 536anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
585 588first strand
Strand 2
B
632 636parallel
Strand 3
B
597 601anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 331first strand
Strand 2
C
337 343anti-parallel
Strand 3
C
386 391anti-parallel
Strand 4
C
360 365parallel
Strand 5
C
368 371anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
475 476first strand
Strand 2
C
464 467anti-parallel
Strand 3
C
518 521anti-parallel
Strand 4
C
490 495parallel
Strand 5
C
539 543parallel
Strand 6
C
535 536anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
585 588first strand
Strand 2
C
632 636parallel
Strand 3
C
597 601anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il