Analysis of interatomic Contacts of Structural Units in PDB entry:
7RY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RY7 entry

There is 1 chain in PDB entry 7RY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 28ASN 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7RY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 42Right-handed 310
Helix 2
AA2
A
74 83Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
110 112Right-handed 310
Helix 5
AA5
A
113 129Right-handed alpha
Helix 6
AA6
A
291 295Right-handed 310
Helix 7
AA7
A
353 357Right-handed 310
Helix 8
AA8
A
378 387Right-handed alpha
Helix 9
AA9
A
413 415Right-handed 310
Helix 10
AB1
A
466 477Right-handed alpha
Helix 11
AB2
A
486 491Right-handed alpha
Helix 12
AB3
A
492 494Right-handed 310
Helix 13
AB4
A
509 513Right-handed alpha
Helix 14
AB5
A
544 548Right-handed alpha
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There are 8 sheets in PDB entry 7RY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
504 508anti-parallel
Strand 3
A
497 501anti-parallel
Strand 4
A
438 441anti-parallel
Strand 5
A
444 447anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
406 409anti-parallel
Strand 4
A
393 397anti-parallel
Strand 5
A
549 554anti-parallel
Strand 6
A
563 569anti-parallel
Strand 7
A
417 425anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
236 239parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
252 254anti-parallel
Strand 3
A
317 327anti-parallel
Strand 4
A
330 341anti-parallel
Strand 5
A
272 275parallel
Strand 6
A
362 365anti-parallel
Strand 7
A
264 266parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
252 254anti-parallel
Strand 3
A
317 327anti-parallel
Strand 4
A
299 300anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
452 456anti-parallel
Strand 3
A
536 540parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
525 527parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
520 523anti-parallel
Strand 3
A
514 517anti-parallel
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