Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RYC entry

There are 5 chains in PDB entry 7RYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 CYS 1GLY 9
O
 PRO 31LEU 345
D
 GLN 11VAL 1246
C
 GLU 3ASN 340
E
 VAL 2LEU 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7RYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
35 67Right-handed alpha
Helix 2
AA2
O
74 92Right-handed alpha
Helix 3
AA3
O
93 102Right-handed alpha
Helix 4
AA4
O
108 143Right-handed alpha
Helix 5
AA5
O
149 168Right-handed alpha
Helix 6
AA6
O
170 174Right-handed alpha
Helix 7
AA7
O
195 209Right-handed alpha
Helix 8
AA8
O
209 235Right-handed alpha
Helix 9
AA9
O
273 299Right-handed alpha
Helix 10
AB1
O
308 316Right-handed alpha
Helix 11
AB2
O
320 332Right-handed alpha
Helix 12
AB3
O
334 345Right-handed alpha
Helix 13
AB4
D
12 24Right-handed alpha
Helix 14
AB5
D
29 34Right-handed alpha
Helix 15
AB6
D
34 44Right-handed alpha
Helix 16
AB7
D
45 48Right-handed 310
Helix 17
AB8
D
1006 1031Right-handed alpha
Helix 18
AB9
D
1045 1049Right-handed 310
Helix 19
AC1
D
1095 1099Right-handed 310
Helix 20
AC2
D
1117 1130Right-handed alpha
Helix 21
AC3
D
1145 1156Right-handed alpha
Helix 22
AC4
D
1159 1163Right-handed 310
Helix 23
AC5
D
1164 1169Right-handed 310
Helix 24
AC6
D
1184 1204Right-handed alpha
Helix 25
AC7
D
1223 1240Right-handed alpha
Helix 26
AC8
C
5 24Right-handed alpha
Helix 27
AC9
C
29 34Right-handed alpha
Helix 28
AD1
E
28 32Right-handed 310
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There are 14 sheets in PDB entry 7RYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
175 181first strand
Strand 2
O
184 189anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1070 1076first strand
Strand 2
D
1079 1085anti-parallel
Strand 3
D
1034 1038parallel
Strand 4
D
1105 1111parallel
Strand 5
D
1138 1144parallel
Strand 6
D
1211 1215parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 329anti-parallel
Strand 4
C
319 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 153first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
166 170anti-parallel
Strand 4
C
175 180anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
218 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
241 245anti-parallel
Strand 3
C
250 252anti-parallel
Strand 4
C
262 264anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
17 24anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
146 148first strand
Strand 2
E
243 246parallel
Strand 3
E
226 227anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
194 195first strand
Strand 2
E
186 190anti-parallel
Strand 3
E
174 178anti-parallel
Strand 4
E
229 231anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
205 207first strand
Strand 2
E
212 214anti-parallel
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