Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7RYE entry

There are 24 chains in PDB entry 7RYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	ARG 80
B	THR 3	ARG 80
C	THR 3	ARG 80
D	THR 3	ARG 80
E	PRO 4	ARG 80
F	ILE 129	PHE 340
G	PRO 4	ARG 80
H	PRO 4	ARG 80
I	PRO 4	ARG 80
J	THR 3	ARG 80
K	THR 3	ARG 80
L	THR 3	ARG 80
M	THR 3	ARG 80
N	THR 3	ARG 80
O	ILE 129	PHE 340
P	THR 3	ARG 80
Q	THR 3	ARG 80
R	ILE 129	PHE 340
S	THR 3	ARG 80
T	PRO 4	ARG 80
U	PRO 4	ARG 80
V	ILE 129	PHE 340
W	PRO 4	ARG 80
X	ILE 129	PHE 340

There are100 helices in PDB entry 7RYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	20	Right-handed alpha
Helix 2	AA2	A	22	35	Right-handed alpha
Helix 3	AA3	A	40	77	Right-handed alpha
Helix 4	AA4	B	7	20	Right-handed alpha
Helix 5	AA5	B	22	37	Right-handed alpha
Helix 6	AA6	B	40	78	Right-handed alpha
Helix 7	AA7	C	7	20	Right-handed alpha
Helix 8	AA8	C	22	37	Right-handed alpha
Helix 9	AA9	C	40	78	Right-handed alpha
Helix 10	AB1	D	7	16	Right-handed alpha
Helix 11	AB2	D	17	21	Right-handed 310
Helix 12	AB3	D	23	37	Right-handed alpha
Helix 13	AB4	D	40	77	Right-handed alpha
Helix 14	AB5	E	8	16	Right-handed alpha
Helix 15	AB6	E	17	35	Right-handed alpha
Helix 16	AB7	E	40	78	Right-handed alpha
Helix 17	AB8	F	131	147	Right-handed alpha
Helix 18	AB9	F	149	175	Right-handed alpha
Helix 19	AC1	F	190	206	Right-handed alpha
Helix 20	AC2	F	227	239	Right-handed alpha
Helix 21	AC3	F	258	268	Right-handed alpha
Helix 22	AC4	F	283	311	Right-handed alpha
Helix 23	AC5	F	311	323	Right-handed alpha
Helix 24	AC6	F	326	331	Right-handed alpha
Helix 25	AC7	F	332	340	Right-handed 310
Helix 26	AC8	G	9	37	Right-handed alpha
Helix 27	AC9	G	40	78	Right-handed alpha
Helix 28	AD1	H	7	37	Right-handed alpha
Helix 29	AD2	H	41	78	Right-handed alpha
Helix 30	AD3	I	9	37	Right-handed alpha
Helix 31	AD4	I	40	78	Right-handed alpha
Helix 32	AD5	J	7	20	Right-handed alpha
Helix 33	AD6	J	22	35	Right-handed alpha
Helix 34	AD7	J	43	79	Right-handed alpha
Helix 35	AD8	K	7	20	Right-handed alpha
Helix 36	AD9	K	22	37	Right-handed alpha
Helix 37	AE1	K	40	77	Right-handed alpha
Helix 38	AE2	L	7	20	Right-handed alpha
Helix 39	AE3	L	22	35	Right-handed alpha
Helix 40	AE4	L	40	77	Right-handed alpha
Helix 41	AE5	M	7	20	Right-handed alpha
Helix 42	AE6	M	22	37	Right-handed alpha
Helix 43	AE7	M	40	78	Right-handed alpha
Helix 44	AE8	N	7	20	Right-handed alpha
Helix 45	AE9	N	22	37	Right-handed alpha
Helix 46	AF1	N	40	78	Right-handed alpha
Helix 47	AF2	O	131	149	Right-handed alpha
Helix 48	AF3	O	149	174	Right-handed alpha
Helix 49	AF4	O	191	207	Right-handed alpha
Helix 50	AF5	O	227	239	Right-handed alpha
Helix 51	AF6	O	258	269	Right-handed alpha
Helix 52	AF7	O	270	272	Right-handed 310
Helix 53	AF8	O	283	311	Right-handed alpha
Helix 54	AF9	O	311	323	Right-handed alpha
Helix 55	AG1	O	326	331	Right-handed alpha
Helix 56	AG2	O	333	340	Right-handed 310
Helix 57	AG3	P	7	20	Right-handed alpha
Helix 58	AG4	P	22	37	Right-handed alpha
Helix 59	AG5	P	40	78	Right-handed alpha
Helix 60	AG6	Q	7	20	Right-handed alpha
Helix 61	AG7	Q	22	37	Right-handed alpha
Helix 62	AG8	Q	40	79	Right-handed alpha
Helix 63	AG9	R	131	145	Right-handed alpha
Helix 64	AH1	R	149	175	Right-handed alpha
Helix 65	AH2	R	190	205	Right-handed alpha
Helix 66	AH3	R	227	239	Right-handed alpha
Helix 67	AH4	R	258	268	Right-handed alpha
Helix 68	AH5	R	269	272	Right-handed 310
Helix 69	AH6	R	283	323	Right-handed alpha
Helix 70	AH7	R	326	334	Right-handed alpha
Helix 71	AH8	R	335	340	Right-handed 310
Helix 72	AH9	S	7	20	Right-handed alpha
Helix 73	AI1	S	22	37	Right-handed alpha
Helix 74	AI2	S	40	80	Right-handed alpha
Helix 75	AI3	T	7	37	Right-handed alpha
Helix 76	AI4	T	40	78	Right-handed alpha
Helix 77	AI5	U	7	20	Right-handed alpha
Helix 78	AI6	U	22	37	Right-handed alpha
Helix 79	AI7	U	40	80	Right-handed alpha
Helix 80	AI8	V	132	147	Right-handed alpha
Helix 81	AI9	V	149	175	Right-handed alpha
Helix 82	AJ1	V	191	206	Right-handed alpha
Helix 83	AJ2	V	227	239	Right-handed alpha
Helix 84	AJ3	V	258	268	Right-handed alpha
Helix 85	AJ4	V	269	272	Right-handed 310
Helix 86	AJ5	V	283	323	Right-handed alpha
Helix 87	AJ6	V	326	331	Right-handed alpha
Helix 88	AJ7	V	335	340	Right-handed 310
Helix 89	AJ8	W	7	37	Right-handed alpha
Helix 90	AJ9	W	40	78	Right-handed alpha
Helix 91	AK1	X	132	147	Right-handed alpha
Helix 92	AK2	X	149	175	Right-handed alpha
Helix 93	AK3	X	191	206	Right-handed alpha
Helix 94	AK4	X	227	239	Right-handed alpha
Helix 95	AK5	X	258	269	Right-handed alpha
Helix 96	AK6	X	270	272	Right-handed 310
Helix 97	AK7	X	283	311	Right-handed alpha
Helix 98	AK8	X	315	323	Right-handed alpha
Helix 99	AK9	X	326	334	Right-handed alpha
Helix 100	AL1	X	335	340	Right-handed 310

There are 10 sheets in PDB entry 7RYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	180	first strand
Strand 2	F	187	189	anti-parallel
Strand 3	F	280	282	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	248	first strand
Strand 2	F	251	254	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	178	181	first strand
Strand 2	O	186	189	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	213	215	first strand
Strand 2	O	252	255	anti-parallel
Strand 3	O	245	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	178	180	first strand
Strand 2	R	187	189	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	245	248	first strand
Strand 2	R	251	254	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	178	180	first strand
Strand 2	V	187	189	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	245	246	first strand
Strand 2	V	253	254	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	178	181	first strand
Strand 2	X	186	189	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	245	248	first strand
Strand 2	X	251	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7RYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYE