Analysis of interatomic Contacts of Structural Units in PDB entry:
7RYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7RYP entry

There are 2 chains in PDB entry 7RYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24GLY 375
B
 PRO 5ASP 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7RYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
81 89Right-handed alpha
Helix 3
AA3
A
89 100Right-handed alpha
Helix 4
AA4
A
115 120Right-handed alpha
Helix 5
AA5
A
130 133Right-handed 310
Helix 6
AA6
A
134 154Right-handed alpha
Helix 7
AA7
A
207 221Right-handed alpha
Helix 8
AA8
A
275 291Right-handed alpha
Helix 9
AA9
A
319 326Right-handed alpha
Helix 10
AB1
A
343 345Right-handed 310
Helix 11
AB2
A
346 361Right-handed alpha
Helix 12
AB3
B
6 22Right-handed alpha
Helix 13
AB4
B
38 51Right-handed alpha
Helix 14
AB5
B
87 105Right-handed alpha
Helix 15
AB6
B
111 127Right-handed alpha
Helix 16
AB7
B
136 152Right-handed alpha
Helix 17
AB8
B
154 173Right-handed alpha
Helix 18
AB9
B
201 222Right-handed alpha
Helix 19
AC1
B
223 241Right-handed alpha
Helix 20
AC2
B
245 263Right-handed alpha
Helix 21
AC3
B
265 280Right-handed alpha
Helix 22
AC4
B
302 326Right-handed alpha
Helix 23
AC5
B
327 328Right-handed 310
Helix 24
AC6
B
329 333Right-handed 310
Helix 25
AC7
B
346 361Right-handed alpha
Helix 26
AC8
B
362 364Right-handed 310
Helix 27
AC9
B
368 382Right-handed alpha
Helix 28
AD1
B
389 410Right-handed alpha
Helix 29
AD2
B
414 434Right-handed alpha
Helix 30
AD3
B
440 455Right-handed alpha
Helix 31
AD4
B
456 459Right-handed 310
Helix 32
AD5
B
464 486Right-handed alpha
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There are 5 sheets in PDB entry 7RYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
28 33parallel
Strand 3
A
335 340parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
69 71anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
256 264parallel
Strand 3
A
237 248anti-parallel
Strand 4
A
162 170anti-parallel
Strand 5
A
173 176anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
237 248anti-parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
203 205anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
197 198anti-parallel
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